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Report for CCDS92837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92837.1 Public Homo sapiens 2 MTLN 24 110 108 CCDS HistoryNCBI Gene:205251Re-query CCDS DB by CCDS ID:92837.1Re-query CCDS DB by GeneID:205251See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 92837.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000611969.5 ENSP00000485064.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000611969.5Link to Ensembl Protein Viewer:ENSP00000485064.1Re-query CCDS DB by Nucleotide ID:ENST00000611969Re-query CCDS DB by Protein ID:ENSP00000485064
Original member Current member EBI ENST00000426713.1 ENSP00000485373.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426713.1Link to Ensembl Protein Viewer:ENSP00000485373.1Re-query CCDS DB by Nucleotide ID:ENST00000426713Re-query CCDS DB by Protein ID:ENSP00000485373
Original member Current member NCBI NM_001384134.1 NP_001371063.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001384134.1Link to Protein Sequence:NP_001371063.1Re-query CCDS DB by Nucleotide ID:NM_001384134Re-query CCDS DB by Protein ID:NP_001371063Link to BLAST:NP_001371063.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371063.1 56 Q8NCU8-2 56 100% 0 0

Chromosomal Locations for CCDS 92837.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 110212355 110212525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (171 nt):
ATGGCGGATGTGTCAGAGAGGACACTGCAGTTGTCCGTGCTAGTAGCCTTCGCTTCTGGAGTACTCCTGG
GCTGGCAGGCGAACCGACTGCGGAGGCGCTACTTGGACTGGAGGAAAAGGAGGCTGCAGGACAAGCTGGC
GGCGACGCAGAAGAAGCTGGACCTGGCCTGA

Translation (56 aa):
MADVSERTLQLSVLVAFASGVLLGWQANRLRRRYLDWRKRRLQDKLAATQKKLDLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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