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Report for CCDS9228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9228.1 Public Homo sapiens 12 DIABLO 24 110 108 CCDS HistoryNCBI Gene:56616Re-query CCDS DB by CCDS ID:9228.1Re-query CCDS DB by GeneID:56616See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 9228.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000464942.7 ENSP00000442360.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000464942.7Link to Ensembl Protein Viewer:ENSP00000442360.2Re-query CCDS DB by Nucleotide ID:ENST00000464942Re-query CCDS DB by Protein ID:ENSP00000442360
Original member Current member EBI ENST00000650715.1 ENSP00000499058.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650715.1Link to Ensembl Protein Viewer:ENSP00000499058.1Re-query CCDS DB by Nucleotide ID:ENST00000650715Re-query CCDS DB by Protein ID:ENSP00000499058
Original member Current member NCBI NM_001371333.1 NP_001358262.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001371333.1Link to Protein Sequence:NP_001358262.1Re-query CCDS DB by Nucleotide ID:NM_001371333Re-query CCDS DB by Protein ID:NP_001358262Link to BLAST:NP_001358262.1
Original member Current member NCBI NM_019887.6 NP_063940.1 Accepted alive Link to Nucleotide Sequence:NM_019887.6Link to Protein Sequence:NP_063940.1Re-query CCDS DB by Nucleotide ID:NM_019887Re-query CCDS DB by Protein ID:NP_063940Link to BLAST:NP_063940.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358262.1 239 Q9NR28-1 239 100% 0 0
NP_063940.1 239 Q9NR28-1 239 100% 0 0

Chromosomal Locations for CCDS 9228.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 122208381 122208577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122216488 122216584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122216759 122216869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122218266 122218397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122224512 122224644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122225965 122226014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGGCGGCTCTGAAGAGTTGGCTGTCGCGCAGCGTAACTTCATTCTTCAGGTACAGACAGTGTTTGTGTG
TTCCTGTTGTGGCTAACTTTAAGAAGCGGTGTTTCTCAGAATTGATAAGACCATGGCACAAAACTGTGAC
GATTGGCTTTGGAGTAACCCTGTGTGCGGTTCCTATTGCACAGAAATCAGAGCCTCATTCCCTTAGTAGT
GAAGCATTGATGAGGAGAGCAGTGTCTTTGGTAACAGATAGCACCTCTACCTTTCTCTCTCAGACCACAT
ATGCGTTGATTGAAGCTATTACTGAATATACTAAGGCTGTTTATACCTTAACTTCTCTTTACCGACAATA
TACAAGTTTACTTGGGAAAATGAATTCAGAGGAGGAAGATGAAGTGTGGCAGGTGATCATAGGAGCCAGA
GCTGAGATGACTTCAAAACACCAAGAGTACTTGAAGCTGGAAACCACTTGGATGACTGCAGTTGGTCTTT
CAGAGATGGCAGCAGAAGCTGCATATCAAACTGGCGCAGATCAGGCCTCTATAACCGCCAGGAATCACAT
TCAGCTGGTGAAACTGCAGGTGGAAGAGGTGCACCAGCTCTCCCGGAAAGCAGAAACCAAGCTGGCAGAA
GCACAGATAGAAGAGCTCCGTCAGAAAACACAGGAGGAAGGGGAGGAGCGGGCTGAGTCGGAGCAGGAGG
CCTACCTGCGTGAGGATTGA

Translation (239 aa):
MAALKSWLSRSVTSFFRYRQCLCVPVVANFKKRCFSELIRPWHKTVTIGFGVTLCAVPIAQKSEPHSLSS
EALMRRAVSLVTDSTSTFLSQTTYALIEAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGAR
AEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGADQASITARNHIQLVKLQVEEVHQLSRKAETKLAE
AQIEELRQKTQEEGEERAESEQEAYLRED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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