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Report for CCDS92112.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92112.1 Public Homo sapiens 16 MRTFB 24 110 108 CCDS HistoryNCBI Gene:57496Re-query CCDS DB by CCDS ID:92112.1Re-query CCDS DB by GeneID:57496See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92112.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000572567.5 ENSP00000459879.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000572567.5Link to Ensembl Protein Viewer:ENSP00000459879.1Re-query CCDS DB by Nucleotide ID:ENST00000572567Re-query CCDS DB by Protein ID:ENSP00000459879
Original member Current member NCBI NM_001365415.2 NP_001352344.1 Accepted alive Link to Nucleotide Sequence:NM_001365415.2Link to Protein Sequence:NP_001352344.1Re-query CCDS DB by Nucleotide ID:NM_001365415Re-query CCDS DB by Protein ID:NP_001352344Link to BLAST:NP_001352344.1

Chromosomal Locations for CCDS 92112.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 14186915 14187035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14210243 14210308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14212354 14212409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14213545 14213620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14217126 14217287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14218820 14218998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14234146 14234283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14240237 14240548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGATCGATAGCTCCAAGAAGCAGCAACAGGGCTTCCCAGAGATTTTAACTGCTGGGGATTTTGAACCAT
TAAAAGAAAAGGAATGCCTTGAGGGGAGCAACCAGAAAAGTCTCAAGGAAGTGCTCCAGCTGAGGCTGCA
ACAAAGGAGGACGAGAGAACAACTAGTGGACCAGGGCATCATGCCACCTTTGAAGAGCCCAGCGGCATTC
CATGAACAGATAAAAAGCTTGGAACGAGCCAGAACTGAAAACTTTTTGAAACACAAGATTCGGAGTCGAC
CAGATCGTTCTGAACTTGTCAGGATGCACATTTTAGAAGAAACATTTGCAGAGCCATCCCTGCAGGCTAC
TCAGATGAAGTTGAAAAGAGCTCGACTAGCAGATGATCTGAATGAAAAGATTGCTCAAAGACCTGGTCCT
ATGGAGCTGGTAGAGAAAAACATCCTTCCTGTGGACTCCAGTGTTAAAGAAGCAATTATAGGCGTTGGGA
AGGAGGACTATCCCCACACTCAGGGCGATTTCTCATTTGATGAAGACAGCAGTGACGCTTTGTCTCCGGA
CCAGCCTGCGAGTCAGGAGTCACAGGGGTCAGCCGCGTCCCCAAGTGAGCCAAAAGTTAGTGAATCGCCA
TCTCCTGTGACTACAAACACTCCAGCGCAGTTTGCTTCAGTGTCCCCAACAGTTCCTGAATTCTTGAAAA
CTCCTCCAACTGCAGATCAGCCTCCCCCACGGCCTGCAGCTCCTGTCCTCCCCACAAACACTGTGTCCTC
AGCAAAGCCTGGCCCAGCACTGGTGAAGCAAAGCCATCCCAAGAATCCAAATGACAAACACCGTAGCAAA
AAGTGCAAAGATCCCAAACCACGGGTAAAGAAGTTAAAGTACCACCAATACATTCCACCAGATCAGAAGG
GTGAGAAGAATGAGCCGCAGATGGACTCTAACTACGCCCGCCTGCTCCAGCAGCAGCAGCTGTTCCTGCA
ACTGCAGATCCTGAGTCAGCAGAAGCAGCACTACAACTACCAGACCATCCTGCCTGCACCATTCAAGTAC
GGCGGGGCCCATGCTATCCTCAACGCGGGGTTTTCTGTGGTTTTTTATGAGGAACTATAA

Translation (369 aa):
MIDSSKKQQQGFPEILTAGDFEPLKEKECLEGSNQKSLKEVLQLRLQQRRTREQLVDQGIMPPLKSPAAF
HEQIKSLERARTENFLKHKIRSRPDRSELVRMHILEETFAEPSLQATQMKLKRARLADDLNEKIAQRPGP
MELVEKNILPVDSSVKEAIIGVGKEDYPHTQGDFSFDEDSSDALSPDQPASQESQGSAASPSEPKVSESP
SPVTTNTPAQFASVSPTVPEFLKTPPTADQPPPRPAAPVLPTNTVSSAKPGPALVKQSHPKNPNDKHRSK
KCKDPKPRVKKLKYHQYIPPDQKGEKNEPQMDSNYARLLQQQQLFLQLQILSQQKQHYNYQTILPAPFKY
GGAHAILNAGFSVVFYEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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