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Report for CCDS91727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91727.1 Public Homo sapiens 12 CAPS2 24 110 108 CCDS HistoryNCBI Gene:84698Re-query CCDS DB by CCDS ID:91727.1Re-query CCDS DB by GeneID:84698See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 91727.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000699294.1 ENSP00000514274.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000699294.1Link to Ensembl Protein Viewer:ENSP00000514274.1Re-query CCDS DB by Nucleotide ID:ENST00000699294Re-query CCDS DB by Protein ID:ENSP00000514274
Original member Current member NCBI NM_001355024.4 NP_001341953.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001355024.4Link to Protein Sequence:NP_001341953.2Re-query CCDS DB by Nucleotide ID:NM_001355024Re-query CCDS DB by Protein ID:NP_001341953Link to BLAST:NP_001341953.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001341953.2 557 Q9BXY5-4 557 100% 0 0

Chromosomal Locations for CCDS 91727.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 75278890 75279065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75282251 75282347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75284961 75285080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75289621 75289775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75291744 75291820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75293249 75293367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75298687 75298780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75298871 75298966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75299837 75299911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75304757 75304876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75312848 75312915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75316312 75316434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75321400 75321576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75323177 75323222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75325239 75325288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75326418 75326498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGATTTAGAGGTTAAAGGAGTTGCTGCCACTTCTAGGAGCCAAATTCAGCCATTCTTTGGAAGAAAGA
AGCCTCTACAACAAAGGTGGACTTCTGAGTCATGGACAAACCAGAATTCTTGCCCACCAGTGGTCCCACG
ACTTGATTTGGGAAGCCTTGTTGACTCTGATGATGAGGATCAGAACATAATACCTGAAAATTTGCCAGCA
CCAACAGACAAATGTAAACTAAAATATCAGCAATGTAAAACTGAAATTAAAGAGGGCTATAAGCAGTATA
GTCAGAGAAATGCAGAAAATACAAAATCAAATGTTACACATAAACAGTCTCCAAGAAACAAGATAGATGA
AAAGTGTGTGCAAGATGAAGAAGCCAACACAGATGACCTTACGACTCTGGATAGGAAAGCCATCTTACAG
CAAGGTTATGCAGACAACTCTTGCGATAAACAACAGAGGGCAAGAAAATTGGATGCAGAAATTGTGGCTG
CAGAGAAGAAGAAACAGATTGTTGCAGAGCAAGTGATGATAGACCACTTATCTAGGGCTGTCATCAGTGA
TCCAGAGCAAAATTTAGCCATTGAGCAAAAAGAAAGTGATCATATCCTTCCAGATTCAAAGATGACACCT
CTTCGATTTAGAAAAAGAACACTACATGAAACAAAGATAAGAACTCATTCTACATTAACTGAAAATGTGC
TTTCTCATAAATTACAGTTTGATGGTAGGATCGTATCACGTAATGGACGTGATGCTTGCAGAGAGCTCAT
TGGGTTCTTTTTCACTCATGACCAATCCCTTACAATTTATGAATATCGACAATTTGGGAAAAATAGAACA
AATGTGCTTCCTTTTATTCAAAAAAGCATTTATAGTCATCAGTGTGGACGAAGAAAAGGAAAACAATACC
GACTTGGTGATTTTTATGTTGGTGCAACCTTGACATTTTTGAGTTCTGATCATCTCAGCCTTCCAGAAAG
CATCAAAGAAAACACATTACTTAAACTCCGAATCACAAATATTGATCAAATAGCTTTGGATTCTCTCAAA
ACTGCTTCTATGGAACAGGAGGATGATATAATCATTCAAGAAACCAATGATAGGCTGGTCTTCAAAGCAA
TTCAAGATGTGCTAAAAGAAAAACTACATAAAAGAGGTGTTCGTATTTTGACTGGATTGGGAAAATATTT
TCAACAGTTGGACAAGGAAGGAAATGGACTTTTAGATAAGGCAGATTTTAAGCAAGCTCTAAAAGTGTTT
CACTTAGAAGTGTCTGAAAAGGATTTTGAGTCTGCATGGCTAATTCTGAATGACAATGGCAATGGCAAGG
TTGATTATGGAGAATTCAAACGTGGTATTATTGGTGAAATGAATGAATACAGGAAATCATATGTTCGAAA
GGCCTTTATGAAACTGGATTTCAACAAAAGTGGCAGTGTGCCTATTATAAACATAAGAAAATGTTACTGT
GCAAAGAAGCATTCTCAAGTAATTTCAGGCCATTCAACAGAGGAAGAAATCAAATCATCCTTTCTAGAAA
CATTAAAAGTTGCCTGCAGCAAGTCTGATGAAGTGTCATATGGTGAATTTGAAGATTACTATGAAGGTTT
AAGTATAGGAATAGTAGATGATGAAGACTTTGTTAACATCTTACGTACTCCATGGGGGATTTAG

Translation (557 aa):
MDLEVKGVAATSRSQIQPFFGRKKPLQQRWTSESWTNQNSCPPVVPRLDLGSLVDSDDEDQNIIPENLPA
PTDKCKLKYQQCKTEIKEGYKQYSQRNAENTKSNVTHKQSPRNKIDEKCVQDEEANTDDLTTLDRKAILQ
QGYADNSCDKQQRARKLDAEIVAAEKKKQIVAEQVMIDHLSRAVISDPEQNLAIEQKESDHILPDSKMTP
LRFRKRTLHETKIRTHSTLTENVLSHKLQFDGRIVSRNGRDACRELIGFFFTHDQSLTIYEYRQFGKNRT
NVLPFIQKSIYSHQCGRRKGKQYRLGDFYVGATLTFLSSDHLSLPESIKENTLLKLRITNIDQIALDSLK
TASMEQEDDIIIQETNDRLVFKAIQDVLKEKLHKRGVRILTGLGKYFQQLDKEGNGLLDKADFKQALKVF
HLEVSEKDFESAWLILNDNGNGKVDYGEFKRGIIGEMNEYRKSYVRKAFMKLDFNKSGSVPIINIRKCYC
AKKHSQVISGHSTEEEIKSSFLETLKVACSKSDEVSYGEFEDYYEGLSIGIVDDEDFVNILRTPWGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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