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Report for CCDS91480.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91480.1 Public Homo sapiens 11 MS4A4E 24 110 108 CCDS HistoryNCBI Gene:643680Re-query CCDS DB by CCDS ID:91480.1Re-query CCDS DB by GeneID:643680See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 91480.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000651255.1 ENSP00000499123.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651255.1Link to Ensembl Protein Viewer:ENSP00000499123.1Re-query CCDS DB by Nucleotide ID:ENST00000651255Re-query CCDS DB by Protein ID:ENSP00000499123
Original member Current member NCBI NM_001393391.1 NP_001380320.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001393391.1Link to Protein Sequence:NP_001380320.1Re-query CCDS DB by Nucleotide ID:NM_001393391Re-query CCDS DB by Protein ID:NP_001380320Link to BLAST:NP_001380320.1

Chromosomal Locations for CCDS 91480.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60201543 60201879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60204890 60204958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60205714 60205820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60208593 60208694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60212974 60213132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60214571 60214614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60228594 60228627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60229912 60230055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGACAACCATGCAAGGAATGGAACAGACCACTCCAGGGGCTGGCCCTGATGTGCCCCAGCTGGGAAACA
TAGATGTCATACATTCATATCTGTGTAAAGGATTGCAAGAGAAGTTCTTCAAGAGGAAACCCAAAGTCCT
TGGGGTTTTGTGTGGACATAAGTTTTCAACTCATTCGGTATCCTTATCAGTTGCAGCAGGAATTAGAACA
ACAAAAGGTCTGGTTGGAGGTAGTCTAGGAAAGAATATCACCAGTTCAGTCTTGGCTATATCAGGGATCT
TAATCAATGCAATAAGCTTGACGTTTTATTCATTCCGTTACCATTACTGTAACCACGATCAGTTGTCAAG
TAATTGTTACATGACTATGTCCATTTTAATGGGTACGGATGGCATGGTGCTCCTCTTAAGTGTGCTGGAA
TTCTGCATTGCTGTGGCCCTCTCTGCCTTTGGATGTAAAGTGCTTTGTTGTAGCCCCAGTGAGAGCAAAA
ATAAAATTAGAAGCAATACTTTCATGTGCTACCTCCTTTCTATTCAGATGCAATATGATGGAAAGAGACT
AAATGTTGATGTCGACAGTACTGTATGGTGCTCCGGAGATGGACAGTATCTGGAAAAAGTCTATTATGAC
ATTCTATCTTCTTGGTTGAGGATTGAAAGTATTTATCGAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGT
GGCGTGATCTCGGCTCCCTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGAGT
GCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCTATCGTCTGG
GACGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCTGCCATCC
CATCTAGGAAGTGGGGAGCGCCTCTTCCCGGCCACCATCCCATCTGGGAGGTGAGGAGTGTCTCCGCCCG
GCCGCCCATCTTCTGA

Translation (331 aa):
MTTMQGMEQTTPGAGPDVPQLGNIDVIHSYLCKGLQEKFFKRKPKVLGVLCGHKFSTHSVSLSVAAGIRT
TKGLVGGSLGKNITSSVLAISGILINAISLTFYSFRYHYCNHDQLSSNCYMTMSILMGTDGMVLLLSVLE
FCIAVALSAFGCKVLCCSPSESKNKIRSNTFMCYLLSIQMQYDGKRLNVDVDSTVWCSGDGQYLEKVYYD
ILSSWLRIESIYRVLNGAQAGVQWRDLGSLQPPPPSRLPWPPKVPRVQPLPGRHPVWEVRSVSAWPPIVW
DVRSPSAWLPSLESEERLCPAAIPSRKWGAPLPGHHPIWEVRSVSARPPIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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