NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9147.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9147.1 Public Homo sapiens 12 GPN3 24 110 108 CCDS HistoryNCBI Gene:51184Re-query CCDS DB by CCDS ID:9147.1Re-query CCDS DB by GeneID:51184See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9147.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000228827.8 ENSP00000228827.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000228827.8Link to Ensembl Protein Viewer:ENSP00000228827.3Re-query CCDS DB by Nucleotide ID:ENST00000228827Re-query CCDS DB by Protein ID:ENSP00000228827
Original member Current member NCBI NM_016301.4 NP_057385.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016301.4Link to Protein Sequence:NP_057385.3Re-query CCDS DB by Nucleotide ID:NM_016301Re-query CCDS DB by Protein ID:NP_057385Link to BLAST:NP_057385.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057385.3 284 Q9UHW5-1 284 100% 0 0

Chromosomal Locations for CCDS 9147.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 110453034 110453096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110453743 110453871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110455586 110455682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110455815 110455930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110457510 110457634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110459695 110459862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110465106 110465214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110468156 110468203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGCCTCGGTATGCGCAGCTGGTCATGGGCCCCGCGGGCAGCGGGAAGAGCACCTACTGTGCCACCATGG
TCCAGCACTGTGAAGCCCTCAACCGGTCTGTCCAAGTTGTAAACCTGGATCCAGCAGCAGAACACTTCAA
CTACTCCGTGATGGCTGACATCCGGGAACTGATCGAGGTGGATGATGTAATGGAGGATGATTCTCTGCGA
TTCGGTCCCAACGGAGGATTGGTATTTTGCATGGAGTACTTTGCCAATAATTTTGACTGGCTGGAGAACT
GTCTTGGCCATGTAGAGGACGACTATATCCTTTTTGATTGTCCAGGTCAGATTGAGTTGTACACTCACCT
GCCTGTGATGAAACAGCTGGTCCAGCAGCTCGAGCAGTGGGAGTTCCGAGTCTGTGGAGTTTTTCTTGTT
GATTCTCAGTTCATGGTGGAGTCATTCAAGTTTATTTCTGGCATCTTGGCAGCCCTGAGTGCCATGATCT
CTCTAGAAATTCCGCAAGTCAACATCATGACAAAAATGGATCTGCTGAGTAAAAAAGCAAAAAAGGAAAT
TGAGAAATTTTTAGATCCAGACATGTATTCTTTATTAGAAGATTCTACAAGTGACTTAAGAAGCAAAAAA
TTCAAGAAACTGACTAAAGCTATATGTGGACTGATTGATGACTACAGCATGGTTCGATTTTTACCTTACG
ATCAGTCAGATGAAGAAAGCATGAACATTGTATTGCAGCATATTGATTTTGCCATTCAATATGGAGAAGA
CCTAGAATTTAAAGAACCAAAGGAACGTGAAGATGAGTCTTCCTCTATGTTTGACGAATATTTTCAAGAA
TGCCAGGATGAATGA

Translation (284 aa):
MPRYAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEVDDVMEDDSLR
FGPNGGLVFCMEYFANNFDWLENCLGHVEDDYILFDCPGQIELYTHLPVMKQLVQQLEQWEFRVCGVFLV
DSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLSKKAKKEIEKFLDPDMYSLLEDSTSDLRSKK
FKKLTKAICGLIDDYSMVRFLPYDQSDEESMNIVLQHIDFAIQYGEDLEFKEPKEREDESSSMFDEYFQE
CQDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH