NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS90741.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90741.1 Public Mus musculus X Gm4779 23 108 98 CCDS HistoryNCBI Gene:102634296Re-query CCDS DB by CCDS ID:90741.1Re-query CCDS DB by GeneID:102634296See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90741.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000147742.8 ENSMUSP00000147427.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147742.8Link to Ensembl Protein Viewer:ENSMUSP00000147427.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000147742Re-query CCDS DB by Protein ID:ENSMUSP00000147427
Current member NCBI NM_001374240.1 NP_001361169.1 Accepted alive Link to Nucleotide Sequence:NM_001374240.1Link to Protein Sequence:NP_001361169.1Re-query CCDS DB by Nucleotide ID:NM_001374240Re-query CCDS DB by Protein ID:NP_001361169Link to BLAST:NP_001361169.1

Chromosomal Locations for CCDS 90741.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 101790608 101790648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101791239 101791284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101791561 101791643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101792181 101792337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101792937 101794295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGAGTTCTCCTGATGAGGTGTCTTTTCGGGGGACCAATTGGGGGCCGGAAAGTGGGGAGCACACAGAGA
GACGCCGGTTTGCCCATGGATTCCCGCGGGGACACGGCCCCGGCCCCGGCCCCGAGGAGAAGGTGTGCCT
TCAGGTCTCCAGGCCTCCCCAGTACGACTCGTGGTTAGACAGGGAGGAGATGGACGGAAGGTCAGTCATT
TGGGGCTGCGAGGGGCGGCCCGGCACCCCAGTGGATGACAGAGGGGACAATCTGGACTTTGTACAGCAGC
TAGCCATCGAGGGTACAAGCTTCGGGCAGCACATAGCCAACCGGGAGGCCTGGGGGATCCACGGACATCA
ATCCCCCCCAAGCTGTGCTGCTGAGCCCATTAGCATTTGGGGAGACTCAGACGCAAGCACGCTCAGAAGA
AGCATGCGGCCTCAGACCTCAACGGAAGGGAAGCAGGTCACAGCTACCCAACTGCACCCCAGAGGTCCGG
GGCGAGGCAGGGCCTGGATGACCCCAAGAAGAAGTGCCATGAGTAGGGTAGTAACCAGTGATGACATTCA
ATGTCCCTCCTCCAGCCCTGAGTCTTCTGATGAGTTCAGTGAGACACAGATGATGAGGGTAACCATTTGT
CTCAAAGAAGGAAACCAGCCCAAGTCCGCTGGCCTCACTGAGCAGGAAGATCCAGCTAGACACACGAATG
TCCATGGCAGGGAAAGTTTTGTCCATGTGCCTCCCTCTATGCTGGCCTCTACTCCAAGAGGACTCGGTTC
AGCCATCGAAAAGCAGGCTTCGGGAGAGCTGGAAAGCTCTTCAGCTAAGAAAAAACAAACTATGGTTTGG
AGCAAAGAAGGGGGCAGGCCCAGCCACCAAGGAGCTACTGCAGCAGCAGCAGCAGCTGCCACTGCCACTG
CCTCTGCCTCTGCCTCTGCCTCTGCCACTGCCAATGCCACTGCCTCTGCCTCTGCCTCTGCCTCTGCCTC
TGCCACTGCCACTGCCACTGCCTCTACTGTTGCCCCTGCCCCTGTTGCTGTTGCTTCTGCTGGCTTATAC
AAGATAAGTCCAAGAAAGAAGCCAGCCCAGGAAAAGCCATCTCAGTGGGACACCTCAAGAGGACCCGTGG
CGAGAATCTTCCCACCATGGGGACAGAGACTCAAATCAGCTACTGTAGAACCAGCCACTTTCCCCCCAAT
CTCAGGGGTTGCTCTGCTAGGGAAGGCAAGTAAATGCTCACTGCCTTCAGGGCCCAAAGAGTTCAAGTCC
GTCTGCACTGGGAAGAAATCCATAGCAAAGAAGACAAGGGAGCCACAGGCAGGGCCCAAAGAAGATAACT
CACCGAGAGATCCTGGTCTGCAGGCCCAAGTTCCACTACACAGGGCAGAGCAGCCTTCCGTGTGCATGCA
TCGTGGAGAAATGAGCAGTGGAGACTCCAACACCAGAGCCCCTCAAGTTCCAGCAAACCCACAGTTCTTC
TTGATCCAGAGATGTGCCAGACCCAGAGCACCACCTGCACCTGCTGGTGACCAGGAATTACCTCTACGTC
TGCCATTCCCAGTTGGCGATAGGCAGCATCAAATACAAGCCATAGGGGGCTGCCAACAGTGTGAGATGTT
ACAGAAGGAAATAGATGAACTCAAGGAACAACTCGCAATCATGCAAGTCTTCAAAGAAAAGTTCCAGGAT
CCTTGA

Translation (561 aa):
MSSPDEVSFRGTNWGPESGEHTERRRFAHGFPRGHGPGPGPEEKVCLQVSRPPQYDSWLDREEMDGRSVI
WGCEGRPGTPVDDRGDNLDFVQQLAIEGTSFGQHIANREAWGIHGHQSPPSCAAEPISIWGDSDASTLRR
SMRPQTSTEGKQVTATQLHPRGPGRGRAWMTPRRSAMSRVVTSDDIQCPSSSPESSDEFSETQMMRVTIC
LKEGNQPKSAGLTEQEDPARHTNVHGRESFVHVPPSMLASTPRGLGSAIEKQASGELESSSAKKKQTMVW
SKEGGRPSHQGATAAAAAAATATASASASASATANATASASASASASATATATASTVAPAPVAVASAGLY
KISPRKKPAQEKPSQWDTSRGPVARIFPPWGQRLKSATVEPATFPPISGVALLGKASKCSLPSGPKEFKS
VCTGKKSIAKKTREPQAGPKEDNSPRDPGLQAQVPLHRAEQPSVCMHRGEMSSGDSNTRAPQVPANPQFF
LIQRCARPRAPPAPAGDQELPLRLPFPVGDRQHQIQAIGGCQQCEMLQKEIDELKEQLAIMQVFKEKFQD
P


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH