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Report for CCDS90635.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90635.1 Public Mus musculus 9 Mei4 23 108 98 CCDS HistoryNCBI Gene:75033Re-query CCDS DB by CCDS ID:90635.1Re-query CCDS DB by GeneID:75033See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90635.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000189832.6 ENSMUSP00000140647.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189832.6Link to Ensembl Protein Viewer:ENSMUSP00000140647.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189832Re-query CCDS DB by Protein ID:ENSMUSP00000140647
Original member Current member NCBI NM_001357477.1 NP_001344406.1 Accepted alive Link to Nucleotide Sequence:NM_001357477.1Link to Protein Sequence:NP_001344406.1Re-query CCDS DB by Nucleotide ID:NM_001357477Re-query CCDS DB by Protein ID:NP_001344406Link to BLAST:NP_001344406.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344406.1 312 Q8BRM6-2 312 100% 0 0

Chromosomal Locations for CCDS 90635.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 81890136 81890367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 81927098 81927633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 81979126 81979257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 82204557 82204595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGATATTCAGCCATGGTATTTGAAAACTTCAAAGCTGGCACTGGCGTTGGCGATTATCCACTCAAAAC
CAGCAGACAGAAGCAGCAGAGAATATACAGAGTACCTGGCTTCCTTGGTGACCCAGAAGGAGTCCACATG
GAAATCAAAACTTGAAGCCTTAGAAGCAGAAGTTCTACAATTACGTCAAAAACTTCTCCTGAGTAGGATT
TCCTCAGGATTGTTTAAGAATGGACCGGATGTGCTCCCCACGTTGTCAGATCAGGAACCTACAAGTTCTG
AAAATACATTGACACTGATGGATGACTCTGGATGTGTTTTATCAAATGAGCAAAGAAACGAACCTGCAGA
ATTATCCCAGCATTTTGTGGAGAGCACCGATCCCCCACTCCTCCCCCTGCCTCTTGAGAAAAGGCCACGC
ACGACCCTGGAAAATCCCCTGTCTTCTCACATGCAGTTCTTTCAACATCTGCTGGAGCTCAAGAAATGGA
CAGAATCCAGTAGTCTGAAAGTATACTTAACCCACTTTGAAAAAGACTCTTCCACAGTTTCTGATTCAGT
TTCACAGTTGTTAGATGCCCTGATCACATTTTACAGGAACCCCAAACTCCCCTTCTCAAGCTTTTGGACA
GAGGCTGTTGGCACATTAGCCAGACTGGCAAGTGATTTTAATTTATCAAATCATATTTTTAAAAGATGTT
CTAAGAAGTTGGAAGAATTTGAAAAAACTCTACTCCAGGCTATTTTAGAGAATAACAGTATAAACCGGTT
CCAGGTACAGCGTTATGTCTCTCAGAGCCTAGTAACCCTAGGAAGTTGCAGCTTGTTGAGGAAGTCTATT
ATATCGCTGCTACTATCAGAAGTGAACAGCTTTGTGGATGACCTGGGAGCCATCGATCAGGCTTTGCCTG
TGGAGCTTGCTGACAGCATTCAGGCTTAA

Translation (312 aa):
MDIQPWYLKTSKLALALAIIHSKPADRSSREYTEYLASLVTQKESTWKSKLEALEAEVLQLRQKLLLSRI
SSGLFKNGPDVLPTLSDQEPTSSENTLTLMDDSGCVLSNEQRNEPAELSQHFVESTDPPLLPLPLEKRPR
TTLENPLSSHMQFFQHLLELKKWTESSSLKVYLTHFEKDSSTVSDSVSQLLDALITFYRNPKLPFSSFWT
EAVGTLARLASDFNLSNHIFKRCSKKLEEFEKTLLQAILENNSINRFQVQRYVSQSLVTLGSCSLLRKSI
ISLLLSEVNSFVDDLGAIDQALPVELADSIQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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