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Report for CCDS90494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90494.1 Public Mus musculus 9 Trpc6 23 108 98 CCDS HistoryNCBI Gene:22068Re-query CCDS DB by CCDS ID:90494.1Re-query CCDS DB by GeneID:22068See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90494.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000214596.1 ENSMUSP00000149686.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214596.1Link to Ensembl Protein Viewer:ENSMUSP00000149686.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214596Re-query CCDS DB by Protein ID:ENSMUSP00000149686
Original member NCBI NM_001282086.1 NP_001269015.1 Updated not alive Link to Nucleotide Sequence:NM_001282086.1Link to Protein Sequence:NP_001269015.1Re-query CCDS DB by Nucleotide ID:NM_001282086Re-query CCDS DB by Protein ID:NP_001269015
Current member NCBI NM_001282086.2 NP_001269015.1 Accepted alive Link to Nucleotide Sequence:NM_001282086.2Link to Protein Sequence:NP_001269015.1Re-query CCDS DB by Nucleotide ID:NM_001282086Re-query CCDS DB by Protein ID:NP_001269015Link to BLAST:NP_001269015.1

Chromosomal Locations for CCDS 90494.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 8544432 8544598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8609700 8610474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8626593 8626775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8634047 8634211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8643506 8643722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8652936 8653200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8655177 8655372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8656542 8656745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8658303 8658377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8677924 8678007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8679468 8679543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8680414 8680565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2559 nt):
ATGAGCCAGAGCCCGAGGTTCGTGACCCGGAGGGGCGGCTCTCTAAAGGCTGCCCCTGGAGCCGGCACCC
GGCGCAACGAGAGCCAGGACTATTTGCTGATGGACGAGCTGGGAGACGACGGCTACCCGCAGCTCCCGCT
GCCACCGTATGGCTACTACCCCAGCTTCCGGGGTAATGAAAACAGACTGACTCACCGGCGGCAGACGATT
CTTCGTGAGAAGGGAAGAAGGTTAGCTAATCGAGGACCAGCATACATGTTTAATGATCATTCAACAAGCC
TGTCTATTGAGGAAGAACGCTTTCTAGATGCAGCTGAATATGGCAACATCCCAGTGGTGCGGAAGATGCT
AGAAGAGTGTCATTCCCTCAATGTTAACTGTGTGGATTACATGGGCCAGAATGCCCTACAGCTGGCTGTG
GCCAATGAGCACTTGGAAATCACAGAGCTGCTACTCAAGAAGGAAAACTTGTCTCGAGTTGGGGATGCTT
TACTTTTAGCCATTAGTAAAGGTTATGTACGGATTGTGGAGGCAATCCTCAACCATCCAGCTTTTGCTGA
AGGCAAAAGGTTAGCGACAAGCCCCAGCCAGTCTGAACTTCAGCAAGATGACTTTTATGCCTATGATGAA
GATGGGACGCGGTTCTCCCATGATGTGACCCCAATCATTCTCGCTGCACATTGCCAGGAATATGAAATTG
TGCATACCCTCCTGAGAAAGGGTGCCCGGATTGAGCGGCCTCATGATTACTTCTGCAAGTGTACAGAATG
CAGCCAGAAGCAGAAGCATGATTCCTTCAGCCACTCTAGATCCAGGATCAATGCATACAAAGGTCTGGCA
AGTCCAGCATACCTGTCATTGTCCAGTGAAGATCCAGTCATGACTGCTTTAGAACTTAGCAATGAGCTGG
CAGTGCTTGCCAACATTGAGAAAGAGTTCAAGAATGACTACAGGAAGCTGTCTATGCAGTGCAAGGATTT
CGTTGTTGGTCTCTTGGACCTCTGCAGAAACACAGAGGAAGTGGAGGCCATCCTGAATGGGGATGCAGAG
ACTCGCCAGCCCGGGGACTTCGGCCGTCCAAATCTCAGCCGTTTAAAACTTGCTATTAAGTATGAAGTAA
AAAAATTTGTGGCTCATCCAAACTGTCAGCAACAGCTCCTGTCCATATGGTATGAGAACCTCTCTGGTTT
ACGGCAGCAGACCATGGCAGTGAAGTTCCTCGTGGTCCTTGCTGTTGCCATTGGATTGCCCTTCCTGGCT
CTCATATACTGGTGTGCTCCTTGCAGCAAGATGGGGAAGATATTGCGAGGACCGTTCATGAAGTTTGTAG
CACACGCAGCCTCCTTCACCATTTTCCTGGGGCTGCTCGTCATGAATGCAGCTGACAGATTTGAAGGCAC
CAAGCTCCTCCCTAATGAAACCAGCACAGATAATGCAAGGCAGCTGTTCAGGATGAAAACATCCTGTTTC
TCATGGATGGAGATGCTCATTATATCCTGGGTAATAGCCAGGATAAAGTGGGACCCTACTGATCCTCAGA
TCATCTCTGAAGGTCTTTATGCAATCGCTGTGGTTTTAAGTTTCTCCAGAATAGCTTACATTTTACCAGC
AAATGAAAGCTTTGGACCTCTGCAGATTTCACTTGGAAGAACAGTGAAAGATATCTTCAAATTCATGGTC
ATATTCATCATGGTGTTTGTAGCCTTTATGATTGGAATGTTCAACCTTTACTCCTACTACATTGGCGCAA
AACAGAATGAAGCATTCACAACAGTTGAGGAAAGTTTTAAGACACTGTTCTGGGCTATCTTTGGTCTTTC
TGAAGTGAAGTCAGTGGTCATTAACTACAATCACAAGTTCATTGAAAACATCGGCTACGTTCTGTATGGT
GTCTATAATGTCACAATGGTCATTGTTTTGCTAAATATGTTAATTGCGATGATCAATAGTTCATTCCAGG
AAATTGAGGATGATGCGGACGTGGAGTGGAAGTTTGCAAGGGCCAAATTGTGGTTTTCCTACTTTGAGGA
GGGGAGAACACTTCCTGTCCCCTTCAATCTTGTACCAAGTCCAAAATCCTTGCTTTATCTCCTATTGAAA
TTTAAGAAATGGATGTGTGAGCTCATCCAGGGTCAAAAGCAAGGCTTCCAAGAAGATGCAGAGATGAACA
AGAGAAATGAAGAAAAGAAATTTGGAATTTCAGGAAGTCACGAAGACCTTTCAAAATTTTCACTTGACAA
AAATCAGTTGGCACACAACAAACAATCAAGTACAAGGAGCTCAGAAGATTATCATTTAAATAGTTTCAGT
AACCCTCCAAGACAATATCAGAAAATCATGAAGAGACTCATTAAAAGATATGTATTGCAGGCCCAGATTG
ATAAGGAGAGCGATGAGGTGAATGAAGGGGAATTGAAGGAAATTAAGCAAGACATCTCAAGTCTCCGTTA
TGAACTCCTTGAAGAGAAATCACAGAACACAGAAGACCTAGCAGAGCTCATTAGAAAACTCGGGGAGAGA
CTGTCGTTAGAGCCAAAGCTGGAGGAAAGCCGCAGATAG

Translation (852 aa):
MSQSPRFVTRRGGSLKAAPGAGTRRNESQDYLLMDELGDDGYPQLPLPPYGYYPSFRGNENRLTHRRQTI
LREKGRRLANRGPAYMFNDHSTSLSIEEERFLDAAEYGNIPVVRKMLEECHSLNVNCVDYMGQNALQLAV
ANEHLEITELLLKKENLSRVGDALLLAISKGYVRIVEAILNHPAFAEGKRLATSPSQSELQQDDFYAYDE
DGTRFSHDVTPIILAAHCQEYEIVHTLLRKGARIERPHDYFCKCTECSQKQKHDSFSHSRSRINAYKGLA
SPAYLSLSSEDPVMTALELSNELAVLANIEKEFKNDYRKLSMQCKDFVVGLLDLCRNTEEVEAILNGDAE
TRQPGDFGRPNLSRLKLAIKYEVKKFVAHPNCQQQLLSIWYENLSGLRQQTMAVKFLVVLAVAIGLPFLA
LIYWCAPCSKMGKILRGPFMKFVAHAASFTIFLGLLVMNAADRFEGTKLLPNETSTDNARQLFRMKTSCF
SWMEMLIISWVIARIKWDPTDPQIISEGLYAIAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMV
IFIMVFVAFMIGMFNLYSYYIGAKQNEAFTTVEESFKTLFWAIFGLSEVKSVVINYNHKFIENIGYVLYG
VYNVTMVIVLLNMLIAMINSSFQEIEDDADVEWKFARAKLWFSYFEEGRTLPVPFNLVPSPKSLLYLLLK
FKKWMCELIQGQKQGFQEDAEMNKRNEEKKFGISGSHEDLSKFSLDKNQLAHNKQSSTRSSEDYHLNSFS
NPPRQYQKIMKRLIKRYVLQAQIDKESDEVNEGELKEIKQDISSLRYELLEEKSQNTEDLAELIRKLGER
LSLEPKLEESRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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