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Report for CCDS90484.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90484.1 Public Mus musculus 8 Sipa1l2 23 108 98 CCDS HistoryNCBI Gene:244668Re-query CCDS DB by CCDS ID:90484.1Re-query CCDS DB by GeneID:244668See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90484.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000212168.1 ENSMUSP00000148557.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212168.1Link to Ensembl Protein Viewer:ENSMUSP00000148557.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212168Re-query CCDS DB by Protein ID:ENSMUSP00000148557
Original member Current member NCBI NM_001357372.1 NP_001344301.1 Accepted alive Link to Nucleotide Sequence:NM_001357372.1Link to Protein Sequence:NP_001344301.1Re-query CCDS DB by Nucleotide ID:NM_001357372Re-query CCDS DB by Protein ID:NP_001344301Link to BLAST:NP_001344301.1

Chromosomal Locations for CCDS 90484.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 125419145 125419291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125421881 125421962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125422579 125422702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125433178 125433309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125439264 125439483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125442583 125442736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125444486 125444710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125447507 125447892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125449881 125449984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125450333 125450433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125451919 125452002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125453301 125453558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125464152 125464426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125468175 125468751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125469748 125469905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125473498 125473601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125474824 125474998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125480154 125480342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125482048 125482181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 125491111 125492596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5115 nt):
ATGAGTGATCCAAGGCCGTCACAGGCAGAGAAGCACAAGCTTGGCAGAGCTGCTGCCAAACTCAAGGACC
CTTCCAGAACCATGCAGGCTGATGATTATTTTGCTCGGAAATTTAAAGCCATCAATGGCAGCATGGGACC
TGCTACTTTAAACACTTCCAGTTCGAGTGAGGGCGGAGGAGGTGGGGGTGGGCCAGCCAATGGTACCCCA
GCAGTGCCCAAGATGGGTGTGAGGGCCAGAGTTTCTGAGTGGCCTCCTAAAAAGGACTGCTCCAAGGACC
TGGCTTGCAAGACGCTGTGGGAGAGTCGTTCTCAGTCCAGCTATGAGAGTGTTACCTCTATCATCCAGAA
TGGCCAAAATGACCAGGGTGACAGGCAGCCAGAGGAGCAGCTGGACCTGGACTTTGTAGAAGCAAAGTAC
ACCATTGGAGACATCTTTGTCCATTCTCCCCAGAGAGGGCTGCACCCCATACGACAGAGGAGCAACAGTG
ACATCACCATCAGTGATATCGATACGGAGGATGTCCTGGACCAACACGCAGTCAACCCCAACACGGGAGC
GGCCCTGCACAGGGAGTATGGGAGCACTTCATCTATTGACAGGCAGGGTCTGTCTGGAGAGAATGTTTTC
GCCATGCTCCGAGGGTACCGAATAGAGAGTTATGACCCTAAAGTGACTGGCTCCTTTGGGTTTCCAGATT
TCTTTCCCTGTGACACTGCCATCTCCCCCAGCCTCCATGCAGCAGCCCAGATTTCCAGAGGAGAATTTGT
CCGCATCTCAGGGTTGGACTACATGGATGGCGGCCTCTTGATGGGGAGGGACAGAGACAAGCCCTTCAAG
CGCAGGCTAAAGTCAGAGTCTGTGGAAACCTCACTCTTCCGAAAACTTCGGGCAGTCAAGAGTGAGCATG
AGACCTTCAAGTTCACGTCTGACCTGGAGGAGGGACGCCTGGACCGAGGCATCCGCCCATGGAGTTGCCA
GAGGTGCTTTGCCCATTACGATGTGCAGAGTATCCTGTTCAACATCAATGAAGCCATGGCCACGAGGGCC
AGTGTAGGGAAGAGAAAGAACATCACCACGGGGGCCTCCGCAGCATCACAGACCCCGGTTCCTGTAGGCC
CAGCCGGAGGCTGCGAGTCCCCGCTGGGCAGTAAGGAGGACCTCAACTCCAAGGAGAACCCAGATGCTGA
TGAGGGCGATGGGAAGAGCAACGACCTGGTCCTCAGCTGTCCATACTTTCGCAATGAGACTGGTGGGGAG
GGCGATAGACGCATTGCCCTCTCTCGGGCCAACTCAGCCTCTTTCAGCTCTGGGGAGAGCTGCTCCTTTG
AGTCATCCCTCAGCTCACACTGTACCAATGCAGGTGTCTCTGTCTTGGAGGTGCCACGGGAGAGCCAGCC
CATCCACAGGGAGAAGGTCAAACGCTACATCATAGAGCACGTCGACCTCGGGGCCTACTACTACCGCAAG
TTCTTCTATGGCAAAGAGCACCAGAACTACTTTGGAATAGATGAAAATCTTGGCCCTGTGGCGGTCAGCA
TCCGGAGGGAGAAGGTGGAAGATCCCAGGGAGAAGGAAGGGTCGCAGTTCAACTACAGGGTGGCCTTCAG
GACAAGCGAGCTCACAACTCTGAGGGGAGCAATCCTAGAAGACGCTGTCCCCTCCACAGCTCGGCACGGC
ACCGCCCGGGGCCTACCCCTCAAGGAAGTCCTGGAGTATGTTATCCCAGAACTGAGTATCCAGTGTCTGC
GGCAAGCAGCCAACTCCCCCAAGGTCCCAGAGCAGCTGCTCAAGCTGGATGAACAAGGGCTGAGCTTCCA
GCACAAAATTGGGATCCTGTACTGCAGAGCTGGGCAGAGCACGGAGGAGGAGATGTACAACAACGAGACT
GCAGGGCCGGCCTTCGAGGAGTTCCTGGACCTCCTCGGCCAGAGAGTGCGGCTGAAGGGTTTCAGCAAGT
ACCGTGCGCAGCTGGACAATAAGACGGATTCCACAGGGACTCACTCCCTCTATACCACATATAAAGACTT
CGAACTCATGTTCCATGTGTCGACGCTGCTTCCATACATGCCAAACAACAGGCAGCAGCTTCTGAGGAAG
AGACACATCGGGAACGACATCGTCACCATTGTCTTCCAAGAGCCCGGCGCCCTCCCCTTCACCCCCAAGA
ACATTCGTTCACACTTCCAGCACGTCTTCGTCATAGTGAAGGTGCACAACCCCTGCACTGAAAACGTGTG
CTACAGTGTTGGAGTCTCCAGGTCAAAGGATGTCCCTCCCTTCGGTCCCCCAATCCCCAAAGGTGTAACT
TTTCCAAAGTCAGCTGTCTTCCGGGACTTCCTTTTAGCCAAAGTGATCAATGCAGAAAATGCGGCCCATA
AGTCAGAGAAATTCCGGGCCATGGCTACCCGAACAAGGCAAGAATACTTGAAGGATTTAGCCGAGAACTT
TGTCACAACCGCCACAGTGGACACTTCTGCAAAATTCAGCTTCATCACGCTGGGGGCAAAGAAGAAAGAG
CGGGTAAAGCCAAGGAAGGACGCGCACCTGTTCAGCATCGGGGCCATCATGTGGCACGTGGTGGCACGGG
ACTTTGGCCAGTCCGCGGACATTGAGTGTCTCCTGGGGATCTCCAATGAGTTCATCATGCTGATCGAGAA
GGATTCCAAGAATGTGGTGTTTAACTGTTCCTGTAGGGACGTGATTGGCTGGACTTCAGGGCTAGTGAGC
ATCAAAGCCTTCTATGAAAGGGGAGAGTGCCTCCTGCTCTCCTCCGTGGATAACCGTTCTGAAGACATCC
GAGAAATAGTGCAACGACTGCTAATAGTAACAAGAGGCTGCGAGACTGTGGAAATGACCCTGAGACGAAA
CGGGCTGGGTCAGCTTGGCTTCCATGTGAACTTTGAAGGAATTGTTGCCGATGTGGAACCTTTCGGCTTT
GCCTGGAAGGCAGGCCTTCGCCAAGGGAGCCGGCTTGTGGAGATCTGCAAGGTGGCTGTGGCCACGCTGA
CCCACGAGCAGATGATTGACTTACTGCGGACATCTGTGACTGTGAAAGTAGTTATCATCCAGCCCCACGA
GGATGGCTCTCCCCGCAGGGGCTGTTCAGAGCTCTGCCGGATCCCCATGGTGGAATACAAGCTGGACAGC
GAGGGCACACCCTGTGAGTACAAGACACCTTTTAGGAGGAACACCACGTGGCACCGTGTGCCCACCCCTG
CCCTACAGCCAGTTTCCAGAGCCTCACCTGTGCCTGGCACACCTGACCGACTCCAGTGCCAGCCGCTGCT
GCAGCAGGCCCAGGCCGCCATCCCCCGGAGCACATCCTTTGATAGGAAGCTGCCTGATGGCACCAGAAGT
TCTCCCAGCAACCAGTCATCATCTAGCGACCCAGGACCTGGTGGGAGCGGACCCTGGCGGCCACAAGTGG
GCTACGATGGGTGCCCATCACCCCTCCTGCTGGAGCACCAGGGCCCAGGCTCTGTGGAGTGCGATGGAAC
CGGGGAGCAGGAGGACCTCTTGGAGGGAGGCAGGCTTCCAGAAACCAAATGGCATGGCCCACCTTCCAAG
GTCCTGAGCTCCTATAAGGAAAGAGTGCTGCAGAAAGACGGAAGCTGCAAAGAGTCCCCCAATAAGCTAT
CTCATATTGGGGATAAGAGCTGCTCCAGCCACTCCAGCAGCAACACTCTGTCTAGTAACACCTCCAGCAA
CAGTGATGACAAGCACTTTGGGTCAGGGGACCTGATGGACCCCGAGCTGCTGGGACTGACCTACATCAAA
GGCGCGTCCACCGACAGCGGCATCGACACCACGCCGTGCATGCCAGCCACCATCCTTGGCCCAGTGCATC
TGACAGGCAGCAGGTCCCTGATGCACAGCCGGGCTGAGCAGTGGGCAGATGCTGCTGATGTCTCGGTAGC
TGACGATGACCCTGCCAAGATGTATGCCCTGCATGGCTATGCCTCTGCCATCTCCAGCAGCGCTGCTGAC
GGTAGCATGGGTGACCTCAGTGAGGTCTCCTCCCACTCCAGTGGCTCGCAGCACTCAGGAAGCCCTTCAG
CTCACTGCTCCAAAAGCACCGGCTCTCTGGACAGTTCCAAAGTCTACATTGTCACTCACGGCGGCGGTCA
GCAGGCACCTGGGGCGGTGACAAAGCCTTACCACAGACAAGGAGCAGCAAACAAATATGTCATTGGCTGG
AAAAAGTCAGAAGGTAGCCCACCACCCGAGGAACCTGAAGTGACGGAATGCCCCAGGATATATGGTGAGA
TGGACATCATGTCCACAGCCACTCAGCACCCGGCAGTGGTGGGAGACTCTGTTTCAGAAACTCAGCATGT
CCTATCCAAAGATGACTTTCTGAAGTTGATGCTGCCGGACAGCCCCTTAGTGGAGGAGGGGAGACGGAAG
TTTTCGTTCTACGGGAACGTGTCTCCACGGAGGTCGCTGTACCGAACACTGTCCGATGAGAGCGTGTGCA
GCAACCGGAGGGGCTCTTCCTTTGCCAGCTCACGAAGCTCCATCCTAGAGCAGGCACTGCCCAACGACAT
TCTGTTTAGCACGACCCCACCCTACCACAGTACGCTGCCTCCAAGAACCCACCCTGCACCCAGCATGGGG
AGCCTACGGAATGAGTTCTGGTTCTCGGATGGGTCCTTATCAGACAAGTCCAAGTGTGCAGATCCTGGCC
TGATGCCGCTGCCAGACACAGCTGCAGGGTTAGACTGGTCCCACCTCGTGGATGCTGCACGAGCATTTGA
AGACCAGAGGGTAGCCTCCTTCTGTACCCTGACCGACCTCCAGCATGGACAAGAACTAGAAGGGGCCCCA
GAGCTGTCCTTGTGTGTAGATCCCACCAGTGGCAAAGAGTTCATGGATACACCTGGGGAGCGATCGCCCT
CCACACTGACTGGGAAAGTTAACCAGCTAGAACTGATTCTCCGACAACTGCAGACTGACCTTCGGAAGGA
GAAGCAGGACAAGGCGGTGCTGCAGGCTGAGGTCCAGCACCTGAGGCAGGACAACATGCGGCTGCAGGAA
GAGTCACAGACAGCCACAGCCCAGCTGCGCAAGTTCACCGAGTGGTTTTTTAGCACCATTGACAAGAAGG
CCTGA

Translation (1704 aa):
MSDPRPSQAEKHKLGRAAAKLKDPSRTMQADDYFARKFKAINGSMGPATLNTSSSSEGGGGGGGPANGTP
AVPKMGVRARVSEWPPKKDCSKDLACKTLWESRSQSSYESVTSIIQNGQNDQGDRQPEEQLDLDFVEAKY
TIGDIFVHSPQRGLHPIRQRSNSDITISDIDTEDVLDQHAVNPNTGAALHREYGSTSSIDRQGLSGENVF
AMLRGYRIESYDPKVTGSFGFPDFFPCDTAISPSLHAAAQISRGEFVRISGLDYMDGGLLMGRDRDKPFK
RRLKSESVETSLFRKLRAVKSEHETFKFTSDLEEGRLDRGIRPWSCQRCFAHYDVQSILFNINEAMATRA
SVGKRKNITTGASAASQTPVPVGPAGGCESPLGSKEDLNSKENPDADEGDGKSNDLVLSCPYFRNETGGE
GDRRIALSRANSASFSSGESCSFESSLSSHCTNAGVSVLEVPRESQPIHREKVKRYIIEHVDLGAYYYRK
FFYGKEHQNYFGIDENLGPVAVSIRREKVEDPREKEGSQFNYRVAFRTSELTTLRGAILEDAVPSTARHG
TARGLPLKEVLEYVIPELSIQCLRQAANSPKVPEQLLKLDEQGLSFQHKIGILYCRAGQSTEEEMYNNET
AGPAFEEFLDLLGQRVRLKGFSKYRAQLDNKTDSTGTHSLYTTYKDFELMFHVSTLLPYMPNNRQQLLRK
RHIGNDIVTIVFQEPGALPFTPKNIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKGVT
FPKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAENFVTTATVDTSAKFSFITLGAKKKE
RVKPRKDAHLFSIGAIMWHVVARDFGQSADIECLLGISNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLVS
IKAFYERGECLLLSSVDNRSEDIREIVQRLLIVTRGCETVEMTLRRNGLGQLGFHVNFEGIVADVEPFGF
AWKAGLRQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIQPHEDGSPRRGCSELCRIPMVEYKLDS
EGTPCEYKTPFRRNTTWHRVPTPALQPVSRASPVPGTPDRLQCQPLLQQAQAAIPRSTSFDRKLPDGTRS
SPSNQSSSSDPGPGGSGPWRPQVGYDGCPSPLLLEHQGPGSVECDGTGEQEDLLEGGRLPETKWHGPPSK
VLSSYKERVLQKDGSCKESPNKLSHIGDKSCSSHSSSNTLSSNTSSNSDDKHFGSGDLMDPELLGLTYIK
GASTDSGIDTTPCMPATILGPVHLTGSRSLMHSRAEQWADAADVSVADDDPAKMYALHGYASAISSSAAD
GSMGDLSEVSSHSSGSQHSGSPSAHCSKSTGSLDSSKVYIVTHGGGQQAPGAVTKPYHRQGAANKYVIGW
KKSEGSPPPEEPEVTECPRIYGEMDIMSTATQHPAVVGDSVSETQHVLSKDDFLKLMLPDSPLVEEGRRK
FSFYGNVSPRRSLYRTLSDESVCSNRRGSSFASSRSSILEQALPNDILFSTTPPYHSTLPPRTHPAPSMG
SLRNEFWFSDGSLSDKSKCADPGLMPLPDTAAGLDWSHLVDAARAFEDQRVASFCTLTDLQHGQELEGAP
ELSLCVDPTSGKEFMDTPGERSPSTLTGKVNQLELILRQLQTDLRKEKQDKAVLQAEVQHLRQDNMRLQE
ESQTATAQLRKFTEWFFSTIDKKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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