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Report for CCDS90314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90314.1 Public Mus musculus 7 Bmal1 23 108 98 CCDS HistoryNCBI Gene:11865Re-query CCDS DB by CCDS ID:90314.1Re-query CCDS DB by GeneID:11865See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90314.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000211770.1 ENSMUSP00000147823.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211770.1Link to Ensembl Protein Viewer:ENSMUSP00000147823.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211770Re-query CCDS DB by Protein ID:ENSMUSP00000147823
Current member NCBI NM_001374642.1 NP_001361571.1 Accepted alive Link to Nucleotide Sequence:NM_001374642.1Link to Protein Sequence:NP_001361571.1Re-query CCDS DB by Nucleotide ID:NM_001374642Re-query CCDS DB by Protein ID:NP_001361571Link to BLAST:NP_001361571.1

Chromosomal Locations for CCDS 90314.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 113280663 113280802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113281402 113281422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113283257 113283295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113283521 113283562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113284999 113285156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113287117 113287196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113291461 113291553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113293178 113293295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113295444 113295593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113299187 113299433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113301551 113301657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113303341 113303491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113304324 113304412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113306018 113306126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113308616 113308709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113312794 113312896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 113313459 113313619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1902 nt):
ATGGCGGACCAGAGAATGGACATTTCCTCAACCATCAGCGACTTCATGTCTCCGGGCCCCACCGACCTAC
TCTCCGGTTCCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCA
ACTTGATGACTTTGCTTTTGAAGAAAGTATGGACACAGACAAAGATGACCCTCATGGAAGGTTAGAATAT
GCAGAACACCAAGGAAGGATCAAGAATGCAAGGGAGGCCCACAGTCAGATTGAAAAGAGGCGTCGGGACA
AAATGAACAGTTTCATTGATGAATTGGCTTCTTTGGTACCAACATGCAATGCAATGTCCAGGAAGTTAGA
TAAACTCACCGTGCTAAGGATGGCTGTTCAGCACATGAAAACTTTGAGAGGTGCCACCAACCCATACACA
GAAGCAAACTACAAGCCAACATTTCTATCAGATGACGAACTGAAACACCTAATTCTCAGGGCAGCAGATG
GATTTTTGTTTGTCGTAGGATGTGACCGAGGGAAGATCCTCTTTGTCTCCGAGTCTGTCTTCAAGATCCT
CAATTATAGCCAGAATGACCTTATTGGCCAGAGCTTGTTTGACTACCTGCATCCAAAAGATATTGCCAAA
GTTAAGGAACAGCTATCTTCCTCGGACACTGCGCCCCGGGAGCGACTCATTGATGCCAAGACTGGACTTC
CGGTTAAAACGGATATAACCCCTGGGCCCTCCCGGCTATGCTCTGGAGCCCGCCGCTCTTTCTTCTGTAG
AATGAAGTGCAACAGGCCTTCAGTAAAGGTGGAAGATAAGGACTTCGCCTCTACCTGTTCAAAGAAAAAA
GCAGATCGAAAAAGCTTCTGCACAATCCACAGCACAGGCTATTTGAAAAGCTGGCCACCCACGAAGATGG
GGCTGGACGAAGACAATGAGCCAGACAACGAGGGCTGCAACCTCAGCTGCCTCGTTGCAATCGGGCGCCT
GCACTCGCACATGGTTCCACAACCAGCGAACGGGGAAATACGGGTGAAATCTATGGAGTACGTTTCTCGA
CACGCAATAGATGGGAAATTTGTTTTTGTAGATCAGAGGGCGACAGCTATTTTGGCGTATCTACCACAGG
AACTTCTAGGTACATCATGTTATGAGTATTTTCATCAAGACGACATAGGACACCTCGCAGAATGTCACAG
GCAAGTTTTACAGACAAGAGAAAAGATCACAACTAATTGCTATAAGTTTAAGATCAAAGATGGTTCTTTT
ATCACGCTACGAAGTCGATGGTTCAGTTTCATGAACCCGTGGACCAAGGAAGTTGAATACATTGTCTCAA
CCAACACTGTTGTTTTAGCCAATGTCCTGGAAGGCGGGGACCCAACCTTCCCGCAGCTAACAGCACCCCC
CCACAGCATGGACAGCATGCTGCCCTCTGGAGAAGGTGGCCCAAAGAGGACTCATCCCACTGTCCCAGGC
ATTCCAGGGGGAACCAGAGCCGGAGCAGGAAAAATAGGTCGAATGATCGCGGAGGAAATCATGGAAATCC
ACAGGATAAGAGGGTCATCGCCTTCCAGCTGTGGCTCCAGCCCGCTGAACATCACAAGTACGCCTCCCCC
TGATGCCTCTTCTCCAGGAGGCAAGAAGATTCTAAATGGAGGGACTCCAGACATTCCTTCCACTGGACTA
TTACCAGGGCAGGCTCAGGAGACCCCAGGGTATCCCTATTCTGATAGTTCTTCTATTCTTGGTGAGAACC
CCCACATAGGCATCGATATGATAGATAACGACCAAGGATCAAGTAGTCCCAGTAACGATGAGGCAGCAAT
GGCTGTCATCATGAGCCTCTTGGAAGCAGATGCGGGGCTGGGTGGCCCCGTTGACTTTAGTGACTTGCCA
TGGCCGCTGTAG

Translation (633 aa):
MADQRMDISSTISDFMSPGPTDLLSGSLGTSGVDCNRKRKGSATDYQLDDFAFEESMDTDKDDPHGRLEY
AEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYT
EANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAK
VKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFASTCSKKK
ADRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNEGCNLSCLVAIGRLHSHMVPQPANGEIRVKSMEYVSR
HAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSF
ITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVLEGGDPTFPQLTAPPHSMDSMLPSGEGGPKRTHPTVPG
IPGGTRAGAGKIGRMIAEEIMEIHRIRGSSPSSCGSSPLNITSTPPPDASSPGGKKILNGGTPDIPSTGL
LPGQAQETPGYPYSDSSSILGENPHIGIDMIDNDQGSSSPSNDEAAMAVIMSLLEADAGLGGPVDFSDLP
WPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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