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Report for CCDS90307.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90307.1 Public Mus musculus 7 Zfp143 23 108 98 CCDS HistoryNCBI Gene:20841Re-query CCDS DB by CCDS ID:90307.1Re-query CCDS DB by GeneID:20841See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90307.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084727.10 ENSMUSP00000081778.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084727.10Link to Ensembl Protein Viewer:ENSMUSP00000081778.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000084727Re-query CCDS DB by Protein ID:ENSMUSP00000081778
Current member NCBI NM_001374618.1 NP_001361547.1 Accepted alive Link to Nucleotide Sequence:NM_001374618.1Link to Protein Sequence:NP_001361547.1Re-query CCDS DB by Nucleotide ID:NM_001374618Re-query CCDS DB by Protein ID:NP_001361547Link to BLAST:NP_001361547.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001361547.1 638 O70230-1 638 100% 0 0

Chromosomal Locations for CCDS 90307.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 110069491 110069602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110070478 110070570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110071372 110071455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110072119 110072202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110074068 110074264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110075641 110075715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110077057 110077176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110080268 110080343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110081792 110081917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110083191 110083370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110086113 110086340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110088728 110088876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110091765 110091926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110093070 110093216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110094291 110094374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1917 nt):
ATGTTGTTAGCACAAATAAATCGGGATTCTCAGGGAATGACAGAATTTCCTGGAGGAGGAATGGAGGCTC
AACATGTTACCCTGTGCCTGACGGAGGCAGTAACCGTGGCAGATGGTGACAATTTAGAAAATATGGAAGG
TGTGAGTTTACAAGCTGTGACACTCGCAGACGGCTCTACTGCTTACATACAGCATAATTCTAAAGACGGG
AGACTCATTGATGGCCAGGTCATTCAGCTGGAAGATGGTTCTGCTGCCTATGTTCAGCATGTCCCCATAC
CTAAAAGTACAGGGGACAGTTTGCGGCTGGAGGATGGGCAAGCAGTGCAGCTAGAAGACGGGACCACTGC
ATTTATCCACCACACCTCGAAAGACAGTTATGACCAGAGCTCACTTCAGGCCGTTCAGTTAGAAGATGGG
ACAACAGCTTATATCCACCATGCAGTGCAAGTCCCACAGTCTGATACCATCTTGGCAATTCAGGCTGATG
GGACAGTGGCAGGGCTGCACACTGGGGATGCCACAATTGACCCAGATACCATTAGTGCTTTGGAGCAGTA
CGCAGCAAAGGTATCCATTGATGGCAGTGACGGTGTAACAAGTACAGGAATGATTGGAGAGAATGAGCAA
GAGAAAAAAATGCAGATTGTCTTACAAGGCCATGCTACTCGGGTAACTCCTAAATCTCAGCAGAGTGGAG
AAAAGGCATTTCGGTGCAAATACGACGGCTGTGGGAAACTCTATACAACAGCTCATCACCTTAAGGTCCA
TGAGCGCTCACACACAGGAGACCGGCCTTACCAGTGTGAGCATTCAGGCTGTGGGAAAGCATTTGCAACA
GGTTATGGATTAAAAAGTCATTTCAGAACTCATACTGGAGAAAAGCCATATCGGTGTTCAGAAGATAATT
GTACAAAGTCTTTCAAAACTTCAGGAGATCTACAGAAGCACATCAGAACCCATACAGGAGAAAGGCCCTT
TAAGTGTCCTATTGAAGGCTGTGGTCGGTCCTTTACCACATCAAATATCAGAAAAGTGCACATTAGGACA
CACACAGGAGAAAGACCTTATTACTGCACAGAACCTGGATGTGGGAGGGCATTTGCCAGCGCAACTAATT
ATAAAAACCATGTGAGGATACACACAGGAGAAAAGCCATATGTCTGTACAGTTCCTGGGTGTGACAAACG
GTTTACAGAATATTCCAGTTTGTATAAACACCATGTCGTTCACACTCACTCTAAACCATACAACTGTAAC
CACTGTGGGAAGACGTACAAACAGATTTCCACACTGGCCATGCACAAACGGACAGCCCACAACGACACAG
AGCCCATTGAGGAGGAGCAGGAAGCCTTCTTCGAGCCTCCCCCAGGTCAAGGTGATGATGTTCTTAAAGG
GTCCCAGATCACATATGTTACAGGTGTAGATGGAGAGGACATTGTATCTACACAAGTAGCCACAGTAACC
CAGTCTGGGCTGAGTCAACAAGTCACACTCATATCACAGGATGGGACTCAACATGTCAACATATCTCAAG
CTGACATGCAGGCCATTGGCAACACCATCACCATGGTAACACAGGATGGCACACCCATCACGGTCCCCAC
TCACGATGCAGTCATCTCCTCAGCAGGAACACATTCTGTTGCTATGGTTACCGCGGAGGGCACAGAAGGA
CAGCAGGTCGCAATTGTAGCTCAAGATCTGGCAGCGTTCCATACAGCATCTTCAGAGATGGGACACCAAC
AACATAGCCATCACCTAGTAACTACAGAAACCAGACCTCTGACCTTAGTGGCAACATCCAACGGCACCCA
GATCGCAGTTCAGCTTGGAGAGCAGCCGTCTCTGGAAGAAGCTATCAGAATAGCATCGAGGATCCAACAA
GGGGAGACGCCAGGGTTGGATGATTAA

Translation (638 aa):
MLLAQINRDSQGMTEFPGGGMEAQHVTLCLTEAVTVADGDNLENMEGVSLQAVTLADGSTAYIQHNSKDG
RLIDGQVIQLEDGSAAYVQHVPIPKSTGDSLRLEDGQAVQLEDGTTAFIHHTSKDSYDQSSLQAVQLEDG
TTAYIHHAVQVPQSDTILAIQADGTVAGLHTGDATIDPDTISALEQYAAKVSIDGSDGVTSTGMIGENEQ
EKKMQIVLQGHATRVTPKSQQSGEKAFRCKYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHSGCGKAFAT
GYGLKSHFRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPIEGCGRSFTTSNIRKVHIRT
HTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSKPYNCN
HCGKTYKQISTLAMHKRTAHNDTEPIEEEQEAFFEPPPGQGDDVLKGSQITYVTGVDGEDIVSTQVATVT
QSGLSQQVTLISQDGTQHVNISQADMQAIGNTITMVTQDGTPITVPTHDAVISSAGTHSVAMVTAEGTEG
QQVAIVAQDLAAFHTASSEMGHQQHSHHLVTTETRPLTLVATSNGTQIAVQLGEQPSLEEAIRIASRIQQ
GETPGLDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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