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Report for CCDS90294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90294.1 Public Mus musculus 7 Or52d13 23 108 98 CCDS HistoryNCBI Gene:546989Re-query CCDS DB by CCDS ID:90294.1Re-query CCDS DB by GeneID:546989See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90294.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000214347.1 ENSMUSP00000154348.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214347.1Link to Ensembl Protein Viewer:ENSMUSP00000154348.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214347Re-query CCDS DB by Protein ID:ENSMUSP00000154348
Original member Current member NCBI NM_001370895.1 NP_001357824.1 Accepted alive Link to Nucleotide Sequence:NM_001370895.1Link to Protein Sequence:NP_001357824.1Re-query CCDS DB by Nucleotide ID:NM_001370895Re-query CCDS DB by Protein ID:NP_001357824Link to BLAST:NP_001357824.1

Chromosomal Locations for CCDS 90294.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 103460223 103461187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103464108 103464126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGGATATCACAATAAGAGAACTCAACACTACACCTACTCAGCTCACTTTCTTTCTGCTTACTGGTGTGC
CAGGATTAGAAGATATTCAGATTTGGATGTCCATACCTTTCAGCTTCATGTACGTTTTGGCTGTGTTAGG
AAATGTGCTGGTCATGGCAGTAGTGGTCTATGACAGGAGCCTCCATGAACCCATGTATCTCTTCCTGGCC
ATGTTGGCATTCAATGATGTCCTCCTCTGTACTGTCACGGTACCCCAAATGCTGCTCATTTTCTGGCAGG
GCCCCTTGGAAGCCACATTCCCTGCATGCCTGACACAGATGTTTTTTGTCCATGCTCTGTTCCTCTCTGA
ATCTGCTGTCTTACTGGCTATGGCTTTTGATCGCTATGTGGCTATCTGCATTCCACTGCATTATACATCC
CTGCTTACAAGCTCTATCATTGGCAAGGTTGGGCTGGTGCTGATAGCTCGAAGTGTGGCTGTTGTTACTC
CAGGTGTTCTACTTATTCTCCGCTTGGACTTTTGCCGAAGCAACATTATCCATCACACATACTGTGAGAA
CATGGGCATTGCCAAGTTGGCTTGCAACAGCTTTACCTTAAATAGCATTTATGGTCTCTCAGCTGCTCTT
CTCACGACAGGGCTGGACTTTGTCTTTATCTCCTTGTCCTACTGGCTAATCTTGAAAACTGTTCTACAAC
TGCCATCAAAAGAAGCACGGACAAAAGCCTTTGGCACCTGCGGAGCTCACATTTGCGTCATTTTAATATT
CTACACACTGGCCTTTTTCTCTTTCTTTACCCATCGCTTTGGGCACCATGTGTCCAGGCACACTCTCATC
CTCCTGGCAAATCTCTATCTACTGATACCCCCAACCATGAACCCCATTGTTTATGGAATAAAGACCAAAG
AGATAAGGATGCGAGTAGTAGGAACCTGTTCTCAAACATTATTCAAGTCTAATGAAACAGCAAAGAACAG
GTAA

Translation (327 aa):
MDITIRELNTTPTQLTFFLLTGVPGLEDIQIWMSIPFSFMYVLAVLGNVLVMAVVVYDRSLHEPMYLFLA
MLAFNDVLLCTVTVPQMLLIFWQGPLEATFPACLTQMFFVHALFLSESAVLLAMAFDRYVAICIPLHYTS
LLTSSIIGKVGLVLIARSVAVVTPGVLLILRLDFCRSNIIHHTYCENMGIAKLACNSFTLNSIYGLSAAL
LTTGLDFVFISLSYWLILKTVLQLPSKEARTKAFGTCGAHICVILIFYTLAFFSFFTHRFGHHVSRHTLI
LLANLYLLIPPTMNPIVYGIKTKEIRMRVVGTCSQTLFKSNETAKNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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