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Report for CCDS90180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90180.1 Public Mus musculus 7 Lypd11 23 108 98 CCDS HistoryNCBI Gene:210155Re-query CCDS DB by CCDS ID:90180.1Re-query CCDS DB by GeneID:210155See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90180.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000205376.1 ENSMUSP00000145595.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205376.1Link to Ensembl Protein Viewer:ENSMUSP00000145595.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205376Re-query CCDS DB by Protein ID:ENSMUSP00000145595
Original member Current member NCBI NM_001362151.1 NP_001349080.1 Accepted alive Link to Nucleotide Sequence:NM_001362151.1Link to Protein Sequence:NP_001349080.1Re-query CCDS DB by Nucleotide ID:NM_001362151Re-query CCDS DB by Protein ID:NP_001349080Link to BLAST:NP_001349080.1

Chromosomal Locations for CCDS 90180.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 24715171 24715358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24723501 24723686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24724481 24724621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24726000 24726063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGGGAGCCTGCCGCATCCAGTATGTCCTGCTCCTCTCTCTGCTGGGCTTCTGCCCCTGCTCAGATACTC
TGAAGTGTCAGAAGGGAATTATGGTGAAATTAGGTAGTGGCTTCACTAAGTCAGAAATTAAATGGATATC
ACCTGGGACCACTGAAACTGCACCTGAGGAGATATGTCAGGAGACACTGCTGCTCATAGATGTAGGTGAA
AAATCTCTCATATTGGCAAGTAAAGGCAGCAGCAAGGCGGAGAGTAAAAGTGTCAATGATGTCCAGGTGT
TTTCCGGAGGACCTGGAATAGTGACTGCCTCTTATGTCCACTTCTGTAACACTGAACTGTGCAACAGTGC
TAACAGCACCAGTGTCCTCATTAAAAACGTGAAACTTTCAGGACCAAGTTGTGAGATGCAGAGATCCTTC
TTCAGGGAGAGAAGGCTGACCTTCCCTCATGAACTCCAGGGATTTCGTCAGCTGACGGTGTCTTGCTTCA
GCTCCTTCCTCCAGCAACAGCGCTTGCAGAACTTCTGCAAACAAAGCTTGTTCCTTCCTCTGCCTGCCCC
ATTACTTAAGATCCAGTGA

Translation (192 aa):
MGACRIQYVLLLSLLGFCPCSDTLKCQKGIMVKLGSGFTKSEIKWISPGTTETAPEEICQETLLLIDVGE
KSLILASKGSSKAESKSVNDVQVFSGGPGIVTASYVHFCNTELCNSANSTSVLIKNVKLSGPSCEMQRSF
FRERRLTFPHELQGFRQLTVSCFSSFLQQQRLQNFCKQSLFLPLPAPLLKIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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