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Report for CCDS90176.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90176.1 Public Mus musculus 7 Gm10668 23 108 98 CCDS HistoryNCBI Gene:100043566Re-query CCDS DB by CCDS ID:90176.1Re-query CCDS DB by GeneID:100043566See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90176.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179491.1 ENSMUSP00000137013.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179491.1Link to Ensembl Protein Viewer:ENSMUSP00000137013.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179491Re-query CCDS DB by Protein ID:ENSMUSP00000137013
Original member Current member EBI ENSMUST00000191073.2 ENSMUSP00000140440.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191073.2Link to Ensembl Protein Viewer:ENSMUSP00000140440.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191073Re-query CCDS DB by Protein ID:ENSMUSP00000140440
Original member Current member NCBI NM_001370900.1 NP_001357829.1 Accepted alive Link to Nucleotide Sequence:NM_001370900.1Link to Protein Sequence:NP_001357829.1Re-query CCDS DB by Nucleotide ID:NM_001370900Re-query CCDS DB by Protein ID:NP_001357829Link to BLAST:NP_001357829.1

Chromosomal Locations for CCDS 90176.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 20724919 20725824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGACGGAGCAGGATCTGAAGATGATGGAGCAGGATCTGAAGGCCTGCTACTCAATTGAAGAGAACTTCG
ACACTAACTATAAGATGCTGAACACACTGGGTGAAGGAAAATTTTCAGTGGTGAAACGAGCCTTCCATGT
CCCCACAAGTACCTCTGTGGCTGTAAAAATTCTCCAAAACACCAAGGAGTACACCTCACCCATCTGCAGG
GAAGCCAGGATTATGAAATCACTTAGCCATCCTAACATTATCAAGCTGTTTCATGTGGTCCAGAGAAGAG
AGACTACCTACCTGGTGATGGAGTATGCCTCAGAGGGAGAGCTACAAGATCGCATCATCAAAGTGGGGTC
TTTAGAGGAGAGCGAGACTCGAAGGCTGTTTGCCCAGATAGTACATGCGGTGCAGTACTGCCATGACCAT
CACATTGTCCATAGAGACATAAAGGCCAGCAACATCTTGATCGACTACAGGGGAAATGCCAAGCTGTGTG
ATTTTGGCTTGGCTGCTGAAGTGATTCCTGGACAAAAGCTGGCAGGTTTCTGTGGCACGCTGCCCTACTG
TGCCCCGGAACTCTTGCAAGCAGAGAAATATGAGGGCCCCCCTGTAGATATCTGGAGTTTAGGGGTCCTC
CTGTTCCTCATGGTATCTGGGAACTTGCCTTTCCAAGGCAGGTATTTTGTGGACTTAAAGCAGGAGATCA
TCTCTGCAAACTTCAGCATCCCTTCCCATGTTTCCATTGATATTCTCAATGTCATCATTGAACTGCTGAT
GATCAATCCCAGCAGGAGGCCCACCATCCACCAAATCATGAGGCACCCCATGATCAGGGGCAGTGAGGCA
TGTTTACCACCTACTTCCACACAGATTTCCCAGGCACCCCAAGCCACAGCATTGTCAGGACCATGA

Translation (301 aa):
MTEQDLKMMEQDLKACYSIEENFDTNYKMLNTLGEGKFSVVKRAFHVPTSTSVAVKILQNTKEYTSPICR
EARIMKSLSHPNIIKLFHVVQRRETTYLVMEYASEGELQDRIIKVGSLEESETRRLFAQIVHAVQYCHDH
HIVHRDIKASNILIDYRGNAKLCDFGLAAEVIPGQKLAGFCGTLPYCAPELLQAEKYEGPPVDIWSLGVL
LFLMVSGNLPFQGRYFVDLKQEIISANFSIPSHVSIDILNVIIELLMINPSRRPTIHQIMRHPMIRGSEA
CLPPTSTQISQAPQATALSGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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