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Report for CCDS90142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90142.1 Public Mus musculus 6 Amn1 23 108 98 CCDS HistoryNCBI Gene:232566Re-query CCDS DB by CCDS ID:90142.1Re-query CCDS DB by GeneID:232566See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90142.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095319.9 ENSMUSP00000092957.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095319.9Link to Ensembl Protein Viewer:ENSMUSP00000092957.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095319Re-query CCDS DB by Protein ID:ENSMUSP00000092957
Original member Current member NCBI NM_001356344.1 NP_001343273.1 Accepted alive Link to Nucleotide Sequence:NM_001356344.1Link to Protein Sequence:NP_001343273.1Re-query CCDS DB by Nucleotide ID:NM_001356344Re-query CCDS DB by Protein ID:NP_001343273Link to BLAST:NP_001343273.1

Chromosomal Locations for CCDS 90142.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 149157758 149157831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149166806 149166917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149169448 149169504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149170833 149171050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149183394 149183538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149184992 149185033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGAGCATTCGGGGTCGGATAACAGATTCCAATATAAGTGAGGTGTTACATCCTGAAGTTCAAAGACTAG
ATCTGAGGAGCTGTGATATCTCAGATGTGGCTCTCCAGCACCTGTGTAAGTGCAGAAAACTGAAGGCACT
AAATCTAAAATCCTGCAGAGAACATAGAAATAGCATAACTTCAGAAGGAATAAAAGCTGTGGCTTCATCC
TGTTCAGACCTTCATGAAATTTATTTGAAAGGATGTTGCAGTGTCACTGATGAAGGAGTCCTTGCTCTTG
CACTCAATTGTCATCTGCTAAAGATCATTGATTTGGGTGGCTGCTTAGGTATTACTGATGTGTCCTTACA
TGCATTAGGAAAAAACTGCCCATTTCTGCAGTGTGTTGACATTTCAACTACGCAGGTATCTGACAATGGT
GTGGTTGCACTTGTTAGTGGACCATGTGCCAAACAATTAGAGGAGATTAACATGAGATACTGTATAAATC
TAACTGATAAGGCTGTAGAAGCTGCTCTGACTGCATGTCCTCGGATATGTATACTTCTTTTCCATGGCTG
CCCCCTGATAACAGATCGTTCACAAGAAGTCTTGGAGCAATTAATAGGATCAAGAAAACTAAAGCAAGTG
ACTTGGTCTGTTTATTGA

Translation (215 aa):
MSIRGRITDSNISEVLHPEVQRLDLRSCDISDVALQHLCKCRKLKALNLKSCREHRNSITSEGIKAVASS
CSDLHEIYLKGCCSVTDEGVLALALNCHLLKIIDLGGCLGITDVSLHALGKNCPFLQCVDISTTQVSDNG
VVALVSGPCAKQLEEINMRYCINLTDKAVEAALTACPRICILLFHGCPLITDRSQEVLEQLIGSRKLKQV
TWSVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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