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Report for CCDS90118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90118.1 Public Mus musculus 6 Slc6a12 23 108 98 CCDS HistoryNCBI Gene:14411Re-query CCDS DB by CCDS ID:90118.1Re-query CCDS DB by GeneID:14411See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90118.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166457.7 ENSMUSP00000126937.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166457.7Link to Ensembl Protein Viewer:ENSMUSP00000126937.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166457Re-query CCDS DB by Protein ID:ENSMUSP00000126937
Original member Current member NCBI NM_001347433.1 NP_001334362.1 Accepted alive Link to Nucleotide Sequence:NM_001347433.1Link to Protein Sequence:NP_001334362.1Re-query CCDS DB by Nucleotide ID:NM_001347433Re-query CCDS DB by Protein ID:NP_001334362Link to BLAST:NP_001334362.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334362.1 614 P31651 614 99.6743% 0 2

Chromosomal Locations for CCDS 90118.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 121347419 121347632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121351939 121352073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121353388 121353528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121354282 121354369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121355287 121355419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121356918 121357052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121358601 121358704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121359022 121359146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121360434 121360546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121360956 121361093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121361834 121361936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121363229 121363329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121363686 121363856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121365229 121365372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1845 nt):
ATGGACAGGAAGGTTGCAGTCCATGAAGATGGCTATCCTGTGGTCTCTTGGGTCCCTGAGGAAGGAGAGA
TGATGGACCAGAAAGGCAAGGACCAGGTGAAGGATCGTGGCCAATGGACCAACAAGATGGAGTTTGTGCT
GTCAGTGGCTGGAGAGATCATTGGCTTAGGCAACGTCTGGAGGTTTCCCTATCTCTGCTACAAGAATGGA
GGTGGAGCTTTCTTCATCCCCTACTTCATCTTCTTCTTCAGCTGTGGCATCCCAGTGTTCTTCCTGGAGG
TGGCACTGGGCCAGTATAGCAGCCAGGGGAGTGTGACTGCTTGGAGGAAGATCTGTCCCCTCCTCCAAGG
CATTGGCATGGCCTCTGTGGTCATCGAGTCTTATTTGAACATCTACTACATTATCATCCTTGCCTGGGCT
CTCTTCTACCTGTTCAGCTCCTTCACCTGGGAGCTTCCCTGGACAACCTGCACCAACTCGTGGAACACAG
AGCACTGCGTGGACTTTCTGAATCACTCATCGGCCAGAGGAGTGAGCTCTTCTGAGAACTTTACCTCGCC
TGTCATGGAATTCTGGGAGAGACGGGTTTTGGGTATTACATCGGGCATCCACGACCTGGGGTCCCTGCGT
TGGGAGCTGGCCTTGTGCCTCCTGCTTGCCTGGATTATCTGCTACTTCTGCATCTGGAAGGGGGTCAAGT
CCACAGGCAAGGTTGTTTACTTCACAGCCACTTTTCCCTACCTGATGCTGATTATTCTTCTGATCCGGGG
TGTCACCCTTCCTGGAGCCTACCAGGGCATCGTCTTCTACCTGAAGCCAGACTTGCTCCGTCTCAAGGAC
CCCCAGGTGTGGATGGATGCGGGCACCCAGATCTTCTTTTCCTTTGCCATCTGCCAGGGGTGCCTGACAG
CCCTGGGCAGCTACAACAAGTACCACAACAACTGCTACAGGGACTCCATCGCCCTCTGCTTCCTGAACAG
TGCTACCAGCTTCGTGGCTGGGTTTGTTGTCTTCTCCATCTTGGGCTTCATGTCTCAGGAGCAGGGAATA
CCCATTTCTGAAGTGGCTGAGTCAGGTCCTGGGCTGGCCTTCATTGCCTTCCCCAAAGCTGTCACCATGA
TGCCTTTGTCCCAGCTGTGGTCCTGCCTCTTCTTCATCATGCTCCTGTTTCTAGGGCTGGACAGCCAGTT
CGTCTGTATGGAGTGCCTGGTGACCGCTTCCATGGATATGTTCCCTCAGCAGCTCCGAAAGAGTGGCCGG
CGGGAGCTGCTGATCCTCGCTATCTCTGTTTTGTGCTACTTGATGGGGCTCCTTTTGGTCACAGAGGGCG
GGATGTATATCTTCCAGCTCTTTGACTACTACGCCTCCAGCGGCATATGCCTACTCTTCCTCTCCTTGTT
TGAGGTGATCTGCATTGGCTGGGTGTATGGGGCCGACCGTTTCTATGACAACGTGGAAGACATGATTGGC
TATCGGCCATGGCCCTTGGTGAAGATCTCCTGGCTCTTCCTGACTCCTGGCCTTTGCCTGGCCACTTTCT
TCTTCTCCTTGAGCAAGTATACACCTCTCAAATACAACAATGTCTACATGTATCCTTCTTGGGGATACTC
CATTGGATGGCTCTTGGCTTTCTCCTCCATGGCCTGTGTCCCACTCTTTATCATCATCACCTTCCTGAAG
ACCCAGGGCTCCTTCAAGAAGCGTCTTCGAAGACTCATCACACCAGACCCCAGTCTGCCCCAGCCAGGGC
GGCGCCCACCACAGGATGGCTCCTCTGCTCAAAACTGTTCGTCCTCTCCAGCCAAACAAGAACTCATTGC
CTGGGAGAAGGAGACTCATTTGTAG

Translation (614 aa):
MDRKVAVHEDGYPVVSWVPEEGEMMDQKGKDQVKDRGQWTNKMEFVLSVAGEIIGLGNVWRFPYLCYKNG
GGAFFIPYFIFFFSCGIPVFFLEVALGQYSSQGSVTAWRKICPLLQGIGMASVVIESYLNIYYIIILAWA
LFYLFSSFTWELPWTTCTNSWNTEHCVDFLNHSSARGVSSSENFTSPVMEFWERRVLGITSGIHDLGSLR
WELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLIILLIRGVTLPGAYQGIVFYLKPDLLRLKD
PQVWMDAGTQIFFSFAICQGCLTALGSYNKYHNNCYRDSIALCFLNSATSFVAGFVVFSILGFMSQEQGI
PISEVAESGPGLAFIAFPKAVTMMPLSQLWSCLFFIMLLFLGLDSQFVCMECLVTASMDMFPQQLRKSGR
RELLILAISVLCYLMGLLLVTEGGMYIFQLFDYYASSGICLLFLSLFEVICIGWVYGADRFYDNVEDMIG
YRPWPLVKISWLFLTPGLCLATFFFSLSKYTPLKYNNVYMYPSWGYSIGWLLAFSSMACVPLFIIITFLK
TQGSFKKRLRRLITPDPSLPQPGRRPPQDGSSAQNCSSSPAKQELIAWEKETHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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