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Report for CCDS90061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90061.1 Public Mus musculus 6 Sh2d6 23 108 98 CCDS HistoryNCBI Gene:71130Re-query CCDS DB by CCDS ID:90061.1Re-query CCDS DB by GeneID:71130See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90061.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159877.2 ENSMUSP00000123776.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159877.2Link to Ensembl Protein Viewer:ENSMUSP00000123776.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159877Re-query CCDS DB by Protein ID:ENSMUSP00000123776
Original member Current member EBI ENSMUST00000162561.8 ENSMUSP00000124673.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162561.8Link to Ensembl Protein Viewer:ENSMUSP00000124673.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000162561Re-query CCDS DB by Protein ID:ENSMUSP00000124673
Original member Current member EBI ENSMUST00000234038.1 ENSMUSP00000157110.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234038.1Link to Ensembl Protein Viewer:ENSMUSP00000157110.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234038Re-query CCDS DB by Protein ID:ENSMUSP00000157110
Original member Current member EBI ENSMUST00000235004.1 ENSMUSP00000157366.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235004.1Link to Ensembl Protein Viewer:ENSMUSP00000157366.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235004Re-query CCDS DB by Protein ID:ENSMUSP00000157366
Current member NCBI NM_001374030.1 NP_001360959.1 Accepted alive Link to Nucleotide Sequence:NM_001374030.1Link to Protein Sequence:NP_001360959.1Re-query CCDS DB by Nucleotide ID:NM_001374030Re-query CCDS DB by Protein ID:NP_001360959Link to BLAST:NP_001360959.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001360959.1 250 Q9D413-2 250 99.6% 0 1

Chromosomal Locations for CCDS 90061.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72513925 72514041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72515226 72515384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72515542 72515625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72515921 72515979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72516389 72516413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72516542 72516572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72517107 72517185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72517550 72517601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72517938 72517960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72518911 72518968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72519761 72519826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGCCAGAGGACTCCCCATAAACCCTTCCTTCCCTACCCGCCCTACCTCTGGCTACCATTTCCCGCTGA
AGACAGCAATGAACCCACAGCCTGCAAAGCAGGGACCTGTTTTTGGAAGGCAAGGGCGAGGTACATCTGC
TAGAATGGTAACAAAGAAACCAGATGAGGACATCTACCTGGAGTGTGAGCCGGATCCAGTTCCAGTCTTG
ACTAGGTCTCTGAGCTCCAAAGCCCTGATACCTCCAGTTCCTCTGCCAAGAACATCTGGATTGCCCAAGT
CAGTGGCTGGTTACCAGGAGGCTCGGAATGGAGCTATGGATGGTGCGTTGAAAGCAGGAAGGAGGCTGTC
TGCTTCCTCCATAGCCCCTGCTCTGAGTAGCTCTGTTGCTGAGAATGGTAGTCTGCTGGGTCAGCCTTGG
TACTCTGGAAACTGTGACCGTCAGTCTGTTGAGAGAGCCCTGCTTCACTTCCAAAAGGATGGGGCCTACA
CGGTGCGCCTCAGCTCTGGGCCTCACAGTTCCCAGCCCTTCACTTTGGCAGTACTCCTCAGAGGCCGTGT
CTTCAACATTCCCATCCGGCAACTGGACGGTGGGCACCACTATGCCCTGGGTCGGGAGGGCAGGAATCAT
GAGGAGCTCTTCTCCTCTGTGGCCGCCATGGTTCAGCATTACACGAAGCACCCCCTGCCCCTTGTGGACG
GACACAGTGGCAACCGGGGACTCACCTACCTGCGCTTCCCCACCAAGCCCTGA

Translation (250 aa):
MARGLPINPSFPTRPTSGYHFPLKTAMNPQPAKQGPVFGRQGRGTSARMVTKKPDEDIYLECEPDPVPVL
TRSLSSKALIPPVPLPRTSGLPKSVAGYQEARNGAMDGALKAGRRLSASSIAPALSSSVAENGSLLGQPW
YSGNCDRQSVERALLHFQKDGAYTVRLSSGPHSSQPFTLAVLLRGRVFNIPIRQLDGGHHYALGREGRNH
EELFSSVAAMVQHYTKHPLPLVDGHSGNRGLTYLRFPTKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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