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Report for CCDS89993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89993.1 Public Mus musculus 5 Gusb 23 108 98 CCDS HistoryNCBI Gene:110006Re-query CCDS DB by CCDS ID:89993.1Re-query CCDS DB by GeneID:110006See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89993.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111308.7 ENSMUSP00000106940.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111308.7Link to Ensembl Protein Viewer:ENSMUSP00000106940.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111308Re-query CCDS DB by Protein ID:ENSMUSP00000106940
Original member Current member NCBI NM_001357026.1 NP_001343955.1 Accepted alive Link to Nucleotide Sequence:NM_001357026.1Link to Protein Sequence:NP_001343955.1Re-query CCDS DB by Nucleotide ID:NM_001357026Re-query CCDS DB by Protein ID:NP_001343955Link to BLAST:NP_001343955.1

Chromosomal Locations for CCDS 89993.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 129999895 130000069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130000361 130000542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130000757 130000942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130002607 130002816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGTCCCTAAAATGGAGTGCGTGTTGGGTCGCGCTGGGCCAGCTGCTGTGCAGCTGCGCGCTGGCTCTGA
AGGGCGGGATGCTGTTCCCGAAGGAGAGCCCGTCGCGGGAGCTCAAGGCGCTGGACGGACTGTGGCACTT
CCGCGCCGACCTCTCGAACAACCGGCTGCAGGGTTTCGAGCAGCAATGGTACCGGCAGCCGCTACGGGAG
TCGGGCCCAGTCTTGGACATGCCTGTCCCTTCTAGCTTCAATGACATCACCCAAGAAGCAGCCCTTCGGG
ACTTTATTGGCTGGGTGTGGTATGAACGGGAAGCAATCCTGCCACGGCGATGGACCCAAGATACCGACAT
GAGAGTGGTGTTGAGGATCAACAGTGCCCATTATTATGCAGTTGTGTGGGTGAATGGGATTCATGTGGTG
GAACATGAGGGAGGTCACCTCCCCTTTGAGGCTGACATTAGCAAGCTGGTCCAGAGTGGGCCCCTGACCA
CCTGCCGGATCACGATTGCCATCAACAACACACTGACCCCTCATACCCTTCCGCCGGGGACCATCGTCTA
CAAGACTGACACCTCCATGTATCCCAAGGGTTACTTTGTCCAGGACACAAGCTTTGACTTCTTCAACTAT
GCGGGACTGCATCGATCTGTGGTCCTCTATACCACCCCTACCACTTACATCGATGATATCACTGTGATCA
CTAATGTGGAGCAAGACATCGGTGAGGAATCCCGGCGGGAGGCTCTGTGCTAG

Translation (250 aa):
MSLKWSACWVALGQLLCSCALALKGGMLFPKESPSRELKALDGLWHFRADLSNNRLQGFEQQWYRQPLRE
SGPVLDMPVPSSFNDITQEAALRDFIGWVWYEREAILPRRWTQDTDMRVVLRINSAHYYAVVWVNGIHVV
EHEGGHLPFEADISKLVQSGPLTTCRITIAINNTLTPHTLPPGTIVYKTDTSMYPKGYFVQDTSFDFFNY
AGLHRSVVLYTTPTTYIDDITVITNVEQDIGEESRREALC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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