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Report for CCDS8999.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8999.1 Public Homo sapiens 12 TSPAN8 24 110 108 CCDS HistoryNCBI Gene:7103Re-query CCDS DB by CCDS ID:8999.1Re-query CCDS DB by GeneID:7103See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8999.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000247829.8 ENSP00000247829.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000247829.8Link to Ensembl Protein Viewer:ENSP00000247829.3Re-query CCDS DB by Nucleotide ID:ENST00000247829Re-query CCDS DB by Protein ID:ENSP00000247829
Original member Current member EBI ENST00000393330.6 ENSP00000377003.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393330.6Link to Ensembl Protein Viewer:ENSP00000377003.2Re-query CCDS DB by Nucleotide ID:ENST00000393330Re-query CCDS DB by Protein ID:ENSP00000377003
Original member Current member EBI ENST00000546561.2 ENSP00000447160.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546561.2Link to Ensembl Protein Viewer:ENSP00000447160.1Re-query CCDS DB by Nucleotide ID:ENST00000546561Re-query CCDS DB by Protein ID:ENSP00000447160
Original member Current member NCBI NM_001369760.1 NP_001356689.1 Accepted alive Link to Nucleotide Sequence:NM_001369760.1Link to Protein Sequence:NP_001356689.1Re-query CCDS DB by Nucleotide ID:NM_001369760Re-query CCDS DB by Protein ID:NP_001356689Link to BLAST:NP_001356689.1
Original member Current member NCBI NM_004616.3 NP_004607.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004616.3Link to Protein Sequence:NP_004607.1Re-query CCDS DB by Nucleotide ID:NM_004616Re-query CCDS DB by Protein ID:NP_004607Link to BLAST:NP_004607.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356689.1 237 P19075 237 100% 0 0
NP_004607.1 237 P19075 237 100% 0 0

Chromosomal Locations for CCDS 8999.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 71125334 71125387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71129331 71129414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71132693 71132824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71137953 71138060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71138156 71138230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71139711 71139848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71144151 71144213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71157619 71157678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGCAGGTGTGAGTGCCTGTATAAAATATTCTATGTTTACCTTCAACTTCTTGTTCTGGCTATGTGGTA
TCTTGATCCTAGCATTAGCAATATGGGTACGAGTAAGCAATGACTCTCAAGCAATTTTTGGTTCTGAAGA
TGTAGGCTCTAGCTCCTACGTTGCTGTGGACATATTGATTGCTGTAGGTGCCATCATCATGATTCTGGGC
TTCCTGGGATGCTGCGGTGCTATAAAAGAAAGTCGCTGCATGCTTCTGTTGTTTTTCATAGGCTTGCTTC
TGATCCTGCTCCTGCAGGTGGCGACAGGTATCCTAGGAGCTGTTTTCAAATCTAAGTCTGATCGCATTGT
GAATGAAACTCTCTATGAAAACACAAAGCTTTTGAGCGCCACAGGGGAAAGTGAAAAACAATTCCAGGAA
GCCATAATTGTGTTTCAAGAAGAGTTTAAATGCTGCGGTTTGGTCAATGGAGCTGCTGATTGGGGAAATA
ATTTTCAACACTATCCTGAATTATGTGCCTGTCTAGATAAGCAGAGACCATGCCAAAGCTATAATGGAAA
ACAAGTTTACAAAGAGACCTGTATTTCTTTCATAAAAGACTTCTTGGCAAAAAATTTGATTATAGTTATT
GGAATATCATTTGGACTGGCAGTTATTGAGATACTGGGTTTGGTGTTTTCTATGGTCCTGTATTGCCAGA
TCGGGAACAAATGA

Translation (237 aa):
MAGVSACIKYSMFTFNFLFWLCGILILALAIWVRVSNDSQAIFGSEDVGSSSYVAVDILIAVGAIIMILG
FLGCCGAIKESRCMLLLFFIGLLLILLLQVATGILGAVFKSKSDRIVNETLYENTKLLSATGESEKQFQE
AIIVFQEEFKCCGLVNGAADWGNNFQHYPELCACLDKQRPCQSYNGKQVYKETCISFIKDFLAKNLIIVI
GISFGLAVIEILGLVFSMVLYCQIGNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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