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Report for CCDS89836.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89836.1 Public Mus musculus 4 Arid1a 23 108 98 CCDS HistoryNCBI Gene:93760Re-query CCDS DB by CCDS ID:89836.1Re-query CCDS DB by GeneID:93760See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89836.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008024.6 ENSMUSP00000008024.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008024.6Link to Ensembl Protein Viewer:ENSMUSP00000008024.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000008024Re-query CCDS DB by Protein ID:ENSMUSP00000008024
Original member NCBI NM_001363070.1 NP_001349999.1 Updated not alive Link to Nucleotide Sequence:NM_001363070.1Link to Protein Sequence:NP_001349999.1Re-query CCDS DB by Nucleotide ID:NM_001363070Re-query CCDS DB by Protein ID:NP_001349999
Current member NCBI NM_001363070.2 NP_001349999.1 Accepted alive Link to Nucleotide Sequence:NM_001363070.2Link to Protein Sequence:NP_001349999.1Re-query CCDS DB by Nucleotide ID:NM_001363070Re-query CCDS DB by Protein ID:NP_001349999Link to BLAST:NP_001349999.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349999.1 1902 A2BH40-4 1902 100% 0 0

Chromosomal Locations for CCDS 89836.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133680331 133682055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133684435 133684565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133684874 133685765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133686229 133686325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133686404 133686556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133686640 133686790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133687204 133687376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133687538 133687670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133689054 133689261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133691070 133691279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133692799 133692908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133693005 133693150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133693758 133694070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133694663 133694830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133695572 133695661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133695916 133696156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133719537 133719653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133720550 133720999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133722839 133723039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5709 nt):
ATGGATCAGATGGGAAAGATGAGACCTCAGCCGTATGGTGGGACTAACCCATACTCGCAACAACAGGGAC
CTCCTTCAGGACCGCAACAAGGACATGGGTACCCAGGGCAGCCATATGGGTCCCAGACTCCACAGCGGTA
CCCCATGACCATGCAGGGCCGGGCTCAGAGTGCCATGGGCAGCCTCTCTTATGCACAGCAGATTCCACCT
TATGGCCAGCAAGGCCCCAGTGCGTATGGCCAGCAGGGCCAGACTCCATACTATAACCAGCAAAGTCCTC
ATCCCCAGCAGCAGCCACCTTACGCCCAGCAACCACCATCCCAGACCCCTCATGCCCAGCCTTCGTATCA
GCAGCAGCCGCAGACTCAGCAACCACAGCTTCAGTCCTCTCAGCCTCCATATTCCCAGCAGCCATCCCAG
CCTCCACATCAGCAGTCCCCAACTCCATATCCCTCCCAGCAGTCCACCACACAACAGCATCCCCAGAGCC
AGCCCCCCTACTCACAACCACAGGCACAGTCTCCCTACCAGCAGCAGCAACCTCAGCAGCCAGCATCCTC
GTCGCTCTCCCAGCAGGCTGCATATCCTCAGCCCCAGCCTCAGCAGTCCCAGCAAACTGCCTATTCCCAG
CAGCGCTTCCCTCCACCACAGGAGCTTTCTCAAGATTCATTTGGGTCTCAGGCATCCTCAGCCCCCTCAA
TGACCTCCAGTAAGGGAGGGCAAGAAGATATGAACCTGAGTCTTCAGTCAAGGCCCTCCAGCTTGCCTGA
TCTGTCTGGTTCAATCGATGATCTCCCCATGGGGACAGAAGGAGCTCTGAGTCCTGGCGTGAGCACATCA
GGGATTTCCAGCAGCCAAGGAGAGCAGAGCAATCCAGCTCAGTCTCCCTTTTCTCCTCACACCTCCCCTC
ACCTGCCTGGCATCCGAGGCCCGTCCCCGTCCCCTGTTGGCTCTCCTGCCAGTGTCGCGCAGTCTCGCTC
AGGACCACTCTCGCCTGCTGCAGTGCCAGGCAACCAGATGCCACCTCGGCCACCCAGTGGCCAGTCAGAC
AGCATCATGCACCCTTCCATGAACCAATCAAGCATTGCCCAAGATCGAGGTTATATGCAGAGGAACCCCC
AGATGCCCCAGTACACTTCCCCTCAGCCTGGCTCGGCCTTATCCCCACGTCAGCCGTCTGGAGGACAGAT
GCACTCGGGCGTGGGCTCCTACCAGCAGAACTCCATGGGGAGCTACGGCCCCCAGGGCAGTCAGTATGGC
CCACAAGGAGGCTATCCTAGGCAGCCTAACTATAATGCCTTGCCCAACGCCAACTACCCCAATGCAGGCA
TGGCCGGAAGTATGAACCCTATGGGTGCTGGAGGTCAGATGCATGGGCAGCCTGGAATCCCACCTTACGG
CACACTCCCTCCAGGGAGAATGGCTCATGCGTCTATGGGCAACAGGCCCTATGGCCCTAATATGGCCAAT
ATGCCACCTCAGGTTGGGTCAGGGATGTGTCCTCCACCAGGGGGAATGAACAGGAAAACTCAAGAGTCTG
CTGTTGCCATGCATGTTGCTGCCAACTCTATCCAAAACAGGCCACCAGGCTACCCAAATATGAATCAAGG
GGGCATGATGGGAACTGGACCTCCCTATGGACAGGGGATCAATAGTATGGCTGGCATGATCAACCCTCAG
GGACCCCCATATCCTATGGGTGGAACCATGGCCAACAATTCAGCAGGGATGGCAGCCAGCCCAGAGATGA
TGGGCCTTGGGGATGTTAAGTTAACTCCCGCCACAAAAATGAACAACAAGGCAGATGGAACACCCAAGAC
AGAATCCAAATCTAAGAAATCCAGTTCTTCTACCACCACCAATGAGAAGATCACCAAATTGTATGAGTTG
GGTGGTGAGCCCGAGAGGAAGATGTGGGTGGACCGGTACCTGGCCTTCACAGAGGAGAAGGCCATGGGCA
TGACAAATCTGCCTGCTGTGGGGAGGAAGCCTCTGGACCTCTATCGCCTCTATGTGTCTGTGAAGGAGAT
TGGTGGGTTGACTCAGGTCAACAAGAACAAAAAATGGCGGGAACTTGCAACCAACCTCAATGTGGGTACA
TCAAGCAGTGCTGCCAGCTCACTGAAAAAGCAGTATATCCAATGTCTCTATGCCTTTGAGTGCAAGATCG
AGCGTGGAGAAGACCCTCCCCCCGATATCTTCGCAGCTGCTGACTCCAAGAAGTCCCAACCCAAGATCCA
GCCCCCCTCTCCTGCGGGATCAGGGTCTATGCAGGGGCCACAAACTCCTCAGTCAACCAGCAGTTCTATG
GCAGAAGGAGGAGACCTGAAGCCACCAACTCCAGCATCCACACCACATAGTCAAATTCCCCCCTTACCAG
GCATGAGGAGCAACTCAGTCGGAATCCAGGATGCCTTTCCTGATGGAAGTGACCCCACATTCCAGAAGCG
GAATTCCATGACTCCAAACCCTGGGTACCAGCCCAGTATGAATACCTCTGACATGATGGGGCGCATGTCC
TATGAGCCAAATAAGGATCCTTATGGCAGCATGAGGAAAGCGCCAGGAAGTGATCCCTTCATGTCCTCAG
GGCAGGGCCCCAATGGCGGGATGGGTGATCCCTACAGCCGTGCTGCTGGCCCTGGGCTGGGAAGTGTGGC
GATGGGACCACGGCAGCACTATCCCTATGGAGGTCCTTACGACAGAGTGAGGACGGAGCCTGGAATCGGG
CCTGAAGGAAATATGGGCACTGGAGCCCCTCAGCCAAATCTCATGCCTTCCACCCCAGATTCGGGGATGT
ATTCTCCTAGCCGCTACCCCCCGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAACGACATGA
TTCCTATGGCAATCAATTCTCTACCCAAGGCACCCCTTCCAGCAGCCCCTTCCCCAGCCAGCAGACCACA
ATGTATCAGCAGCAGCAGCAGAATTATAAGAGGCCAATGGATGGCACATATGGCCCCCCTGCCAAGCGGC
ATGAAGGGGAGATGTACAGTGTGCCGTACAGCGCTGGGCAAGGCCAGCCTCAACAGCAGCAGTTGCCTGC
AGCTCAGTCCCAGCCTGCCAGCCAGCCACAAGCTGCCCAGCCTTCCCCTCAGCAGGACGTGTACAACCAG
TACAGCAATGCCTACCCTGCCTCCGCCACCGCTGCTACTGATCGCCGACCAGCAGGCGGCCCCCAGAACC
AATTTCCATTCCAGTTTGGCCGAGACCGAGTCTCTGCACCTCCTGGTTCCAGTGCCCAGCAGAACATGCC
ACCACAAATGATGGGTGGCCCCATACAGGCATCAGCTGAGGTTGCTCAGCAGGGCACCATGTGGCAGGGG
CGAAATGACATGACCTACAATTATGCCAACAGGCAGAACACAGGCTCTGCCACCCAGGGCCCTGCGTATC
ATGGTGTGAACCGAACAGATGAAATGCTCCACACAGATCAGAGGGCCAACCATGAAGGCCCATGGCCTTC
CCATGGCACACGCCAGCCTCCGTATGGTCCTTCAGCCCCTGTTCCCCCCATGACAAGGCCCCCTCCATCT
AACTACCAGCCCCCACCAAGCATGCCGAATCACATTCCTCAGGTATCCAGCCCCGCTCCCCTCCCCCGGC
CCATGGAGAACCGTACTTCTCCTAGCAAGTCTCCATTCCTGCACTCTGGGATGAAAATGCAAAAGGCGGG
TCCACCGGTGCCTGCTTCGCACATAGCGCCTACCCCTGTGCAGCCGCCTATGATTCGGCGGGATATCACC
TTCCCACCTGGCTCTGTAGAGGCCACTCAGCCTGTGTTGAAGCAGAGAAGGCGGCTCACAATGAAAGACA
TTGGAACCCCGGAGGCATGGCGGGTAATGATGTCCCTCAAGTCCGGGCTCCTGGCAGAGAGCACGTGGGC
GTTAGACACCATTAACATTCTACTGTATGATGACAACAGCATTATGACCTTCAACCTCAGCCAGCTCCCA
GGCTTGCTAGAGCTCCTTGTGGAATATTTCCGTAGATGCCTAATTGAAATCTTTGGCATTTTAAAGGAGT
ATGAGGTAGGGGACCCAGGACAGAGAACATTACTAGACCCTGGGAGATTCACCAAGGTGTATAGTCCAGC
CCATACAGAGGAAGAAGAGGAAGAACACCTTGATCCTAAACTGGAGGAGGAAGAGGAAGAAGGGGTTGGA
AATGATGAGGAGATGGCCTTTTTGGGCAAGGACAAGCCATCTTCAGAGAATAATGAGGAGAAGCTAGTCA
GTAAGTTTGACAAGCTTCCGGTAAAGATCGTGCAGAGGAATGACCCATTTGTGGTGGACTGCTCAGATAA
GCTTGGGCGCGTGCAGGAGTTTGACAGTGGCCTGCTACACTGGCGGATTGGTGGTGGGGATACCACTGAG
CATATCCAGACCCACTTTGAGAGCAAGATAGAGCTGCTGCCTTCCCGGCCTTATGTGCCCTGCCCAACGC
CCCCTCGGAAACACCTCACAACAGTAGAGGGCACACCAGGGACAACGGAGCAGGAGGGCCCCCCGCCCGA
TGGCCTTCCAGAGAAAAGGATCACAGCCACCATGGATGACATGTTGTCTACCCGGTCTAGCACATTGACT
GATGAGGGGGCAAAGAGTGCAGAGGCCACCAAGGAAAGCAGCAAGTTTCCATTTGGCATTAGCCCAGCAC
AGAGCCACCGGAACATCAAAATTTTAGAGGATGAACCCCATAGTAAGGATGAGACCCCACTGTGTACCCT
TCTGGACTGGCAGGATTCCCTTGCTAAGCGCTGTGTCTGTGTCTCCAATACCATCCGGAGCCTGTCGTTT
GTGCCAGGCAACGACTTTGAGATGTCCAAACACCCAGGGCTGCTGCTTATCCTGGGCAAGCTGATCCTGC
TGCACCACAAGCACCCAGAGCGGAAGCAGGCACCACTAACTTATGAGAAGGAGGAGGAACAGGACCAAGG
GGTGAGCTGTGACAAAGTGGAGTGGTGGTGGGACTGCTTGGAGATGCTCCGAGAAAACACGCTGGTCACC
CTCGCCAACATCTCGGGGCAATTGGACCTATCCCCATATCCTGAGAGCATCTGCCTGCCTGTCCTGGACG
GACTCCTACACTGGGCAGTTTGCCCTTCAGCTGAAGCCCAGGACCCCTTCTCAACCCTAGGCCCCAATGC
CGTCCTCTCCCCCCAGAGATTGGTCTTGGAAACCCTCAGCAAACTCAGCATCCAGGACAACAATGTGGAC
CTGATCCTGGCCACTCCCCCTTTTAGCCGCCTGGAGAAGTTGTATAGTACCATGGTGCGCTTCCTCAGTG
ACCGAAAGAACCCAGTGTGCCGGGAGATGGCCGTGGTACTGCTGGCAAATCTGGCCCAGGGGGACAGCCT
GGCAGCCCGGGCCATTGCAGTGCAGAAGGGCAGCATCGGCAACCTCCTGGGTTTCCTGGAGGACAGCCTT
GCTGCCACACAGTTCCAGCAGAGCCAGGCAAGCCTCCTGCATATGCAGAATCCACCCTTTGAACCAACTA
GTGTGGACATGATGCGGCGGGCTGCCCGAGCACTGCTTGCCCTGGCCAAGGTGGATGAGAACCACTCAGA
GTTCACTCTGTATGAGTCACGGCTGTTGGACATCTCCGTGTCACCACTGATGAACTCATTGGTTTCACAA
GTCATTTGTGATGTACTGTTTTTGATTGGCCAGTCATGA

Translation (1902 aa):
MDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGSLSYAQQIPP
YGQQGPSAYGQQGQTPYYNQQSPHPQQQPPYAQQPPSQTPHAQPSYQQQPQTQQPQLQSSQPPYSQQPSQ
PPHQQSPTPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPASSSLSQQAAYPQPQPQQSQQTAYSQ
QRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTS
GISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSD
SIMHPSMNQSSIAQDRGYMQRNPQMPQYTSPQPGSALSPRQPSGGQMHSGVGSYQQNSMGSYGPQGSQYG
PQGGYPRQPNYNALPNANYPNAGMAGSMNPMGAGGQMHGQPGIPPYGTLPPGRMAHASMGNRPYGPNMAN
MPPQVGSGMCPPPGGMNRKTQESAVAMHVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQ
GPPYPMGGTMANNSAGMAASPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYEL
GGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGT
SSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGSMQGPQTPQSTSSSM
AEGGDLKPPTPASTPHSQIPPLPGMRSNSVGIQDAFPDGSDPTFQKRNSMTPNPGYQPSMNTSDMMGRMS
YEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDPYSRAAGPGLGSVAMGPRQHYPYGGPYDRVRTEPGIG
PEGNMGTGAPQPNLMPSTPDSGMYSPSRYPPQQQQQQQQQQQQQRHDSYGNQFSTQGTPSSSPFPSQQTT
MYQQQQQNYKRPMDGTYGPPAKRHEGEMYSVPYSAGQGQPQQQQLPAAQSQPASQPQAAQPSPQQDVYNQ
YSNAYPASATAATDRRPAGGPQNQFPFQFGRDRVSAPPGSSAQQNMPPQMMGGPIQASAEVAQQGTMWQG
RNDMTYNYANRQNTGSATQGPAYHGVNRTDEMLHTDQRANHEGPWPSHGTRQPPYGPSAPVPPMTRPPPS
NYQPPPSMPNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGPPVPASHIAPTPVQPPMIRRDIT
FPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSIMTFNLSQLP
GLLELLVEYFRRCLIEIFGILKEYEVGDPGQRTLLDPGRFTKVYSPAHTEEEEEEHLDPKLEEEEEEGVG
NDEEMAFLGKDKPSSENNEEKLVSKFDKLPVKIVQRNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTE
HIQTHFESKIELLPSRPYVPCPTPPRKHLTTVEGTPGTTEQEGPPPDGLPEKRITATMDDMLSTRSSTLT
DEGAKSAEATKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKRCVCVSNTIRSLSF
VPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGVSCDKVEWWWDCLEMLRENTLVT
LANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQDPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVD
LILATPPFSRLEKLYSTMVRFLSDRKNPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSL
AATQFQQSQASLLHMQNPPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQ
VICDVLFLIGQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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