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Report for CCDS89789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89789.1 Public Mus musculus 4 Dynlt5 23 108 98 CCDS HistoryNCBI Gene:67344Re-query CCDS DB by CCDS ID:89789.1Re-query CCDS DB by GeneID:67344See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89789.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000223169.1 ENSMUSP00000152761.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223169.1Link to Ensembl Protein Viewer:ENSMUSP00000152761.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223169Re-query CCDS DB by Protein ID:ENSMUSP00000152761
NCBI NM_001374706.1 NP_001361635.1 Updated not alive Link to Nucleotide Sequence:NM_001374706.1Link to Protein Sequence:NP_001361635.1Re-query CCDS DB by Nucleotide ID:NM_001374706Re-query CCDS DB by Protein ID:NP_001361635
Current member NCBI NM_001374706.2 NP_001361635.1 Accepted alive Link to Nucleotide Sequence:NM_001374706.2Link to Protein Sequence:NP_001361635.1Re-query CCDS DB by Nucleotide ID:NM_001374706Re-query CCDS DB by Protein ID:NP_001361635Link to BLAST:NP_001361635.1

Chromosomal Locations for CCDS 89789.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 102980253 102980365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102992495 102992586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103002458 103002582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103004141 103004344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGTCAGCATTGGCTAAAGAGAAACTGTTTCTTGCAATGAAGAAAAGGGGGAGCATGTGTTCCCCAAATA
ATCGTGAGTTCCGACAGAAGGAAGGTCACTGGCGCATCAAACATTCCCTCAGTACCGTGTCCCACGCGGA
TGAGCCCAGCCAGCGTGATGAATCCTCTCGCCTCACAGTCCGGATGGAAAACACCTACCAGTTAGGTCCC
ACCAAACCTTTCCCCGTGGCCACTGTCAATCATATTTTGGAAGATGTACTAACTACCTACCTACAAGAAG
CACAATATGACCCAGAGTTCTGCAGACAAATGACTAAAACAATTTCTGAGGTTATTAAGACCCAGGTCAA
GGAATTAGTGATTCCGAGATATAAACTAATTGTCATCGTTTACATCGGACAGCGGGATGACCAGAGCATA
GTTATTGGCAGCAGATGCCTCTGGAATCCTAAAAGTGATACTGTCTCGTCCTATACTTTCAAAAATTCTA
CATTCTTTGCACTTGCAAATGTCTATGCAGTTTACTTCGAGTGA

Translation (177 aa):
MSALAKEKLFLAMKKRGSMCSPNNREFRQKEGHWRIKHSLSTVSHADEPSQRDESSRLTVRMENTYQLGP
TKPFPVATVNHILEDVLTTYLQEAQYDPEFCRQMTKTISEVIKTQVKELVIPRYKLIVIVYIGQRDDQSI
VIGSRCLWNPKSDTVSSYTFKNSTFFALANVYAVYFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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