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Report for CCDS89735.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89735.1 Public Mus musculus 4 Cimip2b 23 108 98 CCDS HistoryNCBI Gene:329831Re-query CCDS DB by CCDS ID:89735.1Re-query CCDS DB by GeneID:329831See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89735.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107929.9 ENSMUSP00000103562.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107929.9Link to Ensembl Protein Viewer:ENSMUSP00000103562.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107929Re-query CCDS DB by Protein ID:ENSMUSP00000103562
Original member Current member NCBI NM_001369077.1 NP_001356006.1 Accepted alive Link to Nucleotide Sequence:NM_001369077.1Link to Protein Sequence:NP_001356006.1Re-query CCDS DB by Nucleotide ID:NM_001369077Re-query CCDS DB by Protein ID:NP_001356006Link to BLAST:NP_001356006.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356006.1 273 A2AIP0-1 273 100% 0 0

Chromosomal Locations for CCDS 89735.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43427183 43427271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43427513 43427710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43427788 43427839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43427973 43428169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43428243 43428466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43429028 43429089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGGCTGTGGTCAACACTTCCATCCCAGGGCTCAGCGGCGAGAATCCGCATTATATTCCAGGGTACACCG
GACACTGCCCGCTACTTCGGTTCAGCATGGGCCAGACCTATGGGCAGGTGACTGGTCAGCTACTCCGAGG
CCCTCCTGGTCTAGCCTGGCCTCCTGCCCACCGCACACTTCTGCCTCCCATCCAGTCTCCAAGATCTCCT
GTGATCTCCAAGGGGAGGCTGCCTCCCAGGCGCGGGCATGAAAGGCTCAGCTCCAGCATAATCCCTGGGT
ATACAGGTTTTATACCACGGGCACAGTTCATTTTTGCCAAGAACTGCAACCAGGTTTGGGCTGAAGCTAT
GAGTGAATTTACACGAAGGCACGGGGAGCAAGAGAGCCATCAACTGCCAGACGGAGCCAAGGGAGAGAGA
GAAGTGGAAGAAGACCAGCTGCGGGAGGCAGAGGAGCCACCGCTGAAGCAGGAGTTGGCACATGCTTCCC
CCTACTCCATGGATGATACAGATCCCCACAAGTTCTTCATGTCAGGTTTCACGGGCTATGTGCCCCGTGC
CCGCTTCCTCTTTGGCTCCAGCTTCCCTGTGCTTACCAACCAGGCATTGCAGGAATTTGGGCAGATGTGC
TCACGGGGCCGGGCGCACAAGGACCCCAAACCTCTCTCCCCACTTCCCAGGCCCACGTTTCAGAATCTGG
GTCTCCTACCTCACTACGGAGGCTACGTGCCAGGATATAAGTTCCAGTTTGGCGGTACATTTGGGCATCT
TACCCATGATGCTCTGGGCCTCAGCATTACTCAGAAACAGCTCCCGGCCTAA

Translation (273 aa):
MAVVNTSIPGLSGENPHYIPGYTGHCPLLRFSMGQTYGQVTGQLLRGPPGLAWPPAHRTLLPPIQSPRSP
VISKGRLPPRRGHERLSSSIIPGYTGFIPRAQFIFAKNCNQVWAEAMSEFTRRHGEQESHQLPDGAKGER
EVEEDQLREAEEPPLKQELAHASPYSMDDTDPHKFFMSGFTGYVPRARFLFGSSFPVLTNQALQEFGQMC
SRGRAHKDPKPLSPLPRPTFQNLGLLPHYGGYVPGYKFQFGGTFGHLTHDALGLSITQKQLPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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