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Report for CCDS89690.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89690.1 Public Mus musculus 3 Arhgef38 23 108 98 CCDS HistoryNCBI Gene:77669Re-query CCDS DB by CCDS ID:89690.1Re-query CCDS DB by GeneID:77669See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 89690.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000147041.9 ENSMUSP00000114238.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147041.9Link to Ensembl Protein Viewer:ENSMUSP00000114238.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000147041Re-query CCDS DB by Protein ID:ENSMUSP00000114238
Original member Current member NCBI NM_001368752.1 NP_001355681.1 Accepted alive Link to Nucleotide Sequence:NM_001368752.1Link to Protein Sequence:NP_001355681.1Re-query CCDS DB by Nucleotide ID:NM_001368752Re-query CCDS DB by Protein ID:NP_001355681Link to BLAST:NP_001355681.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355681.1 770 Q80VK6-3 770 100% 0 0

Chromosomal Locations for CCDS 89690.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 133116440 133116625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133132041 133132282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133132389 133132587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133133595 133133738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133137266 133137577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133140773 133140889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133142187 133142291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133146420 133146553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133149451 133149650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133154140 133154157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133160719 133160866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133176371 133176494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133206893 133207080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133234628 133234823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2313 nt):
ATGGAGCCCAGAGAAGCCGCTGGGAAGGAAACCATGGGAAGCAAGAAGAAGAACTTGACTTTCTTGAGAT
CCAGGCTGTATATGCTGGAGAGGAGGAAGACGGATACTGTGGTGGACAGCAGTGTTTCTGGGGACCACTC
TGGTTCCTTGAGGAGAAGCCAGTCTGACAGGACCGAATACAACCAGAAACTACAAGAAAAGATGACTCCA
CAGGCTGAGTGCTCCTCAGCAGAAACTCCCACCCCTGAGGATGAGCAACAAGTGGGACGGATGATGGCAA
AGCGGGCCAAGATCATCAGGGAGCTGATACAGACGGAGAGGGATTACCTCACAGATCTAGAGCTGTGCCT
TAGAGAAGTGGTCCAGCCACTGCGAAGCAAACAGATTGACAGGCTGGACGTGGAGGGCTTGTTTAGCAAC
ATTGAATCTGTGCATCAAATATCAGCCAAGCTACTGTCCTTGCTGGAAGAGGCCACAACAGACGTGGAAC
CGGCCATGCAAGTAATCGGAGAGGTATTCTTGCAGATTAAAGGACCGCTGGAGGATATTTATAAAATCTA
TTGCTATCACCATGATGAAGCACACAGCGTCCTAGAGTCCTATGAAAAGGAAGAGGAGCTGAAGCAACAT
CTGAGCCACTGCCTCCAGTCCTTAAAGAATATATATTTGCAAGAAGGCAAGCCGAACCTGCTGGACATGG
GCTCTTTGATGATCAAACCCATTCAGCGAGTGATGAAATATCCCCTGCTGCTGTGCGAACTCCGGAACTC
GACCCCACCCTCCCACCCAGACTACAGAGCCCTGGGCGAAGCCTTCGCTGCTGTGAAGGACATTAACGTT
AACATCAATGAGCTGAAAAGGAGGAAAGACCTAGTTCTAAAATATAAGAAGAACGAGGAGGAGGAATCCC
TCAAAGACAAACTATCTAAACTAAACATTCATTCAATTAGCAAGAAGTCAAAAAGAGTCACAAATCATCT
GAAGATCCTAACCAGAGGAGAGTCACAGGTGAAAGACAATACCTTTAACAGAGAAGAAAAGCTTTTTAGG
TCACTAGAAAAGACTGTGAGACTTTGTGTGAAGAACATCTCCTCCTGCCTTCAGCACATAGAGGAAGCCA
CGCCCTTCACGCTGCAGAGTGGGGCGGAGCTCCGTGAGATTTCATACCAGGATGGAGAGAAAAATGGCAC
AGAACCCCAGGATCAGGCTTCAAAGCCCTACCAAGACTTTGCAGCTCGTTCTCAGAGACTTATCCTGAAT
CCCCTGTCAGCCTTGCTGTCCTTATTCCCCGGACCTCAGAAACTCATCCAGAAACGCTACGACAAGCTGC
TGGACTATAATAGCTCCCTGCCGCGGTCAGCAACCACTGAATCAGACTTAGCCAAACGAGAGTATGAGGC
CCTCAATGCCCAACTTGTGGAAGAGCTGCAGGCTTTCAACCAGGCTGCCAAGACGATCCTGCTGAACTGC
CTGTGCAGTTTTGTCACCCTCCTCCGGGACTTGATGCAGGTGGCTCTGCAGGCTTACTCCACAGTCAAGA
CGGTGCCACTGCCAGTCTTGGGCATCTCAGAGATTCAGAGTCGAGTGCTGGAAGAGGTTCACAGCCTGAC
TTTTGTAAAGGAGAACAGTGCCACCTTCATTGAGAGGAAACTTAGCTTTGAAAAGAAGAAGCCTGCACAG
ATTCTGCCAGAAGTGCCACATCAAACTGACGCTCACCGCTCCAAACTTCTGTCCACATATGGAGCAGAGG
AACTCTACCGCGCTAAGCGCAAGTGTAATGCCACCCAAGAACATGACATCAATCTTCTAGAAGGGGAGTT
GGTAGCTGTCCTGGAACAGAAGGATCCCCTGGGGAGTACAAGCAGGTGGTTTGTGGACACCGGATGTGTA
AAAGGCTACGTGTACTCCTCCTTCCTAAAGCCCCACAACCCAGGAAAAGGGCAGAAGGTGGATGCAGACA
ACAGATTCTGTGACGACGATTTCGAGAACATCAGTCTCTTTGTGTCTTGCCGGCCAGCTGGTGACAGAGT
CAGCATAAGCGACAGCAGCTCATCTCTTAGTGGCTCTTGTGGGAAGTTTGAAACAAATGGTGCTGATGCT
GATAATTTTCAAGAGGTAGATGAGCAGATTTTCTATGCAGTCCATGCTTTCCAAGCACGGAGTGACCACG
AACTCAGCCTTCAAGAGTACCAGCGAGTCCATATACTTAGATTCTGTGATCTAAGTGGAAACAAAGAGTG
GTGGTTAGCTGAAGCTCAAGGTCAGAAAGGGTATGTGCCTGCCAACTACCTTGGGAAGATGACGTATGCT
TAA

Translation (770 aa):
MEPREAAGKETMGSKKKNLTFLRSRLYMLERRKTDTVVDSSVSGDHSGSLRRSQSDRTEYNQKLQEKMTP
QAECSSAETPTPEDEQQVGRMMAKRAKIIRELIQTERDYLTDLELCLREVVQPLRSKQIDRLDVEGLFSN
IESVHQISAKLLSLLEEATTDVEPAMQVIGEVFLQIKGPLEDIYKIYCYHHDEAHSVLESYEKEEELKQH
LSHCLQSLKNIYLQEGKPNLLDMGSLMIKPIQRVMKYPLLLCELRNSTPPSHPDYRALGEAFAAVKDINV
NINELKRRKDLVLKYKKNEEEESLKDKLSKLNIHSISKKSKRVTNHLKILTRGESQVKDNTFNREEKLFR
SLEKTVRLCVKNISSCLQHIEEATPFTLQSGAELREISYQDGEKNGTEPQDQASKPYQDFAARSQRLILN
PLSALLSLFPGPQKLIQKRYDKLLDYNSSLPRSATTESDLAKREYEALNAQLVEELQAFNQAAKTILLNC
LCSFVTLLRDLMQVALQAYSTVKTVPLPVLGISEIQSRVLEEVHSLTFVKENSATFIERKLSFEKKKPAQ
ILPEVPHQTDAHRSKLLSTYGAEELYRAKRKCNATQEHDINLLEGELVAVLEQKDPLGSTSRWFVDTGCV
KGYVYSSFLKPHNPGKGQKVDADNRFCDDDFENISLFVSCRPAGDRVSISDSSSSLSGSCGKFETNGADA
DNFQEVDEQIFYAVHAFQARSDHELSLQEYQRVHILRFCDLSGNKEWWLAEAQGQKGYVPANYLGKMTYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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