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Report for CCDS89614.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89614.1 Public Mus musculus 3 Zfand1 23 108 98 CCDS HistoryNCBI Gene:66361Re-query CCDS DB by CCDS ID:89614.1Re-query CCDS DB by GeneID:66361See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89614.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108377.7 ENSMUSP00000104014.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108377.7Link to Ensembl Protein Viewer:ENSMUSP00000104014.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108377Re-query CCDS DB by Protein ID:ENSMUSP00000104014
Original member NCBI NM_001331013.1 NP_001317942.1 Updated not alive Link to Nucleotide Sequence:NM_001331013.1Link to Protein Sequence:NP_001317942.1Re-query CCDS DB by Nucleotide ID:NM_001331013Re-query CCDS DB by Protein ID:NP_001317942
Current member NCBI NM_001331013.2 NP_001317942.1 Accepted alive Link to Nucleotide Sequence:NM_001331013.2Link to Protein Sequence:NP_001317942.1Re-query CCDS DB by Nucleotide ID:NM_001331013Re-query CCDS DB by Protein ID:NP_001317942Link to BLAST:NP_001317942.1

Chromosomal Locations for CCDS 89614.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 10341002 10341145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10344801 10344922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10345935 10346026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10346110 10346237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10347165 10347204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10348510 10348552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10351242 10351296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGGCGGAGTTGGACATTGGGCAGCACTGCCAGGTGCAGCACTGCCGGCAGCGAGATTTTCTTCCATTTG
TGTGTGATGGTTGTTCAGGAATATTTTGCCTTGAACACAGAAGCAAGGACTCTCATGGTTGTTCTGAGGT
GAATGTAGTCAAGGAGAGACCAAAGACAGATGAACACAAATCTTACTCATGCTCTTTCAAGGGCTGCACT
GACGTAGAGCTTGTGGCAGTGATCTGTCCTTACTGTGAGAAGAACTTTTGCCTGAGACACCGTCATCAGT
CGGATCATGACTGTGAAAAGCTGGAAGTCGCAAAGCCTCGAATGGCTGCCACACAGAAACTTGTCAGAGA
CATTGTCGATGCCAAGACAGGAGGGGCAGCAAGTAAGGGACGGAAAGGCGCAAAAAGTAGCGGAACAGCG
GCGAAGGTGGCGCTGATGAAGCTAAAGATGCACGCTGATGGGGATAAGTCCCTGCCGCAGAAAGAACATA
CTTCCAGGTCTACTTGCCAAAGGGGAGCAAGGAAAAAAGCAAAGCCATGTTCTTTTGCCTGCGGTGGAGC
ATCGGGAAGGTTGTGGACTTTGCAGCTTCTCTCGCTAATCTCAGGAATGAAAACAACAAGCTGA

Translation (207 aa):
MAELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCSEVNVVKERPKTDEHKSYSCSFKGCT
DVELVAVICPYCEKNFCLRHRHQSDHDCEKLEVAKPRMAATQKLVRDIVDAKTGGAASKGRKGAKSSGTA
AKVALMKLKMHADGDKSLPQKEHTSRSTCQRGARKKAKPCSFACGGASGRLWTLQLLSLISGMKTTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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