NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89580.1 Public Mus musculus 2 Acot8 23 108 98 CCDS HistoryNCBI Gene:170789Re-query CCDS DB by CCDS ID:89580.1Re-query CCDS DB by GeneID:170789See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89580.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017451.6 ENSMUSP00000017451.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017451.6Link to Ensembl Protein Viewer:ENSMUSP00000017451.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000017451Re-query CCDS DB by Protein ID:ENSMUSP00000017451
Original member Current member NCBI NM_001362756.1 NP_001349685.1 Accepted alive Link to Nucleotide Sequence:NM_001362756.1Link to Protein Sequence:NP_001349685.1Re-query CCDS DB by Nucleotide ID:NM_001362756Re-query CCDS DB by Protein ID:NP_001349685Link to BLAST:NP_001349685.1

Chromosomal Locations for CCDS 89580.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164792951 164793010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164795082 164795179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164795652 164795809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164799720 164799945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164802997 164803133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164804690 164804817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGTCAGCGCCAGAGGGTCTGGGAGATGCTCATGGCGACGCCGACCGCGGCGACCTTTCCGGGGACCTCC
GTAGTGTGCTGGTCACGAGCGTGCTCAACCTCGAGCCGCTAGATGAAGATCTCTACAGAGGAAGGCATTA
CTGGGTACCTACCTCCCAGCGGCTCTTTGGGGGTCAAATTATGGGCCAGGCCCTGGTGGCTGCAGCCAAG
TCTGTGAGTGAAGACGTCCATGTCCACTCCCTGCACTGCTACTTTGTCCGGGCAGGGGACCCGAAAGTGC
CAGTGCTGTACCACGTAGAGAGGATACGGACAGGAGCCAGCTTCTCAGTGCGCGCCGTGAAGGCTGTGCA
GCATGGCAAGGCCATCTTCATCTGCCAGGCCTCCTTCCAGCAGATGCAGCCCAGCCCGCTGCAGCACCAG
TTCTCCATGCCCTCCGTGCCCCCGCCAGAAGACCTGCTGGATCACGAGGCCCTCATTGACCAGTACTTAA
GGGACCCTAACCTTCACAAGAAGTATCGAGTGGGGCTGAACCGAGTTGCTGCCCAGGAGGTACCTATTGA
GATCAAGGTGGTGAACCCACCCACCCTGACCCAGCTGCAGGCACTGGAGCCCAAACAGATGTTCTGGGTG
CGTGCCCGGGGCTACATTGGGGAAGGTGACATCAAGATGCATTGCTGTGTGGCTGCTTATATCTCTGACT
ACGCCTTCCTGGGTACAGCACTGCTGCCCCACCAGTCCAAGTATAAGGTGGCTCTCGAGGGCTGGTGCAT
GGGCGGCTGTGGCGTCGGGATGGGGTCCTTGCTGTGA

Translation (268 aa):
MSAPEGLGDAHGDADRGDLSGDLRSVLVTSVLNLEPLDEDLYRGRHYWVPTSQRLFGGQIMGQALVAAAK
SVSEDVHVHSLHCYFVRAGDPKVPVLYHVERIRTGASFSVRAVKAVQHGKAIFICQASFQQMQPSPLQHQ
FSMPSVPPPEDLLDHEALIDQYLRDPNLHKKYRVGLNRVAAQEVPIEIKVVNPPTLTQLQALEPKQMFWV
RARGYIGEGDIKMHCCVAAYISDYAFLGTALLPHQSKYKVALEGWCMGGCGVGMGSLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH