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Report for CCDS89487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89487.1 Public Mus musculus 2 Prpf40a 23 108 98 CCDS HistoryNCBI Gene:56194Re-query CCDS DB by CCDS ID:89487.1Re-query CCDS DB by GeneID:56194See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89487.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000209364.1 ENSMUSP00000147671.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209364.1Link to Ensembl Protein Viewer:ENSMUSP00000147671.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209364Re-query CCDS DB by Protein ID:ENSMUSP00000147671
Original member Current member NCBI NM_001371018.1 NP_001357947.1 Accepted alive Link to Nucleotide Sequence:NM_001371018.1Link to Protein Sequence:NP_001357947.1Re-query CCDS DB by Nucleotide ID:NM_001371018Re-query CCDS DB by Protein ID:NP_001357947Link to BLAST:NP_001357947.1

Chromosomal Locations for CCDS 89487.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 53139178 53139270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53140461 53140592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53141619 53141680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53141767 53141863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53141943 53142029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53144784 53144879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53145233 53145370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53145620 53145736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53145824 53145915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53146094 53146208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53150638 53150771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53151679 53151829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53152446 53152554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53152958 53153122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53153464 53153528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53153964 53154072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53156623 53156985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53157893 53157917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53159263 53159316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53159558 53159678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53160776 53160886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53175016 53175032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53176386 53176416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53177353 53177433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53189969 53190100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53191149 53191232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2781 nt):
ATGTGCAGCGGCAGTGGCCGCCGACGGAGCAGTCTGAGCCCGACGATGAGGCCGGGGACTGGAGCCGAGC
GTGGAGGCCTCATGATGGGGCATCCTGGCATGCATTATGCACCAATGGGCATGCACCCTATGGGTCAGAG
AGCAAACATGCCTCCTGTACCTCATGGAATGATGCCACAGATGATGCCCCCTATGGGAGGGCCTCCAATG
GGACAAATGCCTGGAATGATGTCTTCAGTAATGTCAGGAATGATGATGTCTCATATGTCTCAGGCTTCCA
TGCAACCTGCCTTACCGCCTGGAGTAAATAGTATGGATGTAGCAGCAGGTGCAGCATCTGGTGCAAAATC
AATGTGGACAGAACATAAATCACCTGATGGAAGGACTTATTATTACAATACTGAAACAAAACAGTCTACC
TGGGAAAAGCCAGATGATCTTAAAACACCTGCTGAGCAACTATTGTCTAAATGCCCATGGAAAGAGTACA
AATCTGATTCCGGGAAGCCTTATTACTATAATTCTCAAACAAAGGAGTCCCGCTGGGCCAAACCTAAGGA
ACTTGAAGATCTTGAAGGATACCAGAATACCATTGTTGCTGGAGGTCTTATTACAAAATCAAACCTGCAT
GCCATGATCAAAGCTGAAGAAAGCAGCAAGCAAGAAGAATGTACTACAGCATCAACAGCCCCAGTTCCTA
CAACAGAAATTCCTACCACTATGAGCACCATGGCTGCTGCAGAAGCAGCGGCTGCTGTTGTTGCAGCTGC
TGCAGCTGCTGCAGCAGCAGCTAATGCCAATACTTCCACCACACCTACTAATACTGTGGGAAGTGTTCCA
GTTGCTCCTGAACCTGAGGTTACTTCCATTGTTGCTACTGCTGTAGATAATGAAAATACAGTAACTGTAT
CAACTGAAGAGCAAGCACAGCTTGCTAATACCACAGCTATTCAAGATCTCAGTGGTGATATATCCAGTAA
CACTGGAGAGGAACCAGCTAAACAAGAAACTGTCTCCGATTTTACTCCTAAAAAAGAAGAGGAAGAGAGC
CAACCAGCAAAAAAAACATATACTTGGAATACAAAGGAGGAGGCAAAGCAAGCATTTAAAGAATTATTGA
AAGAAAAGCGGGTGCCCTCCAATGCTTCATGGGAGCAGGCTATGAAAATGATCATAAATGATCCTCGGTA
CAGTGCTTTAGCAAAGCTGAGTGAGAAAAAGCAGGCCTTTAATGCCTATAAAGTCCAGACGGAGAAAGAG
GAAAAAGAAGAAGCAAGATCAAAATACAAAGAAGCTAAGGAATCTTTTCAGCGTTTTCTTGAAAATCATG
AGAAAATGACTTCCACAACCAGATACAAAAAAGCTGAGCAAATGTTTGGGGAGATGGAAGTTTGGAATGC
AATTTCAGAGCGTGATCGTCTAGAAATCTATGAAGATGTTTTGTTCTTCCTTTCAAAGAAAGAAAAGGAA
CAAGCAAAGCAGCTACGAAAGAGAAATTGGGAAGCCTTAAAAAACATACTTGACAATATGGCTAACGTTA
CATACTCTACCACTTGGTCTGAAGCCCAGCAGTATCTGATGGATAATCCAACGTTCGCAGAGGATGAAGA
GTTACAGAACATGGATAAAGAAGATGCATTAATATGCTTTGAGGAACACATCCGGGCTTTAGAAAAGGAA
GAAGAAGAAGAAAAACAGAAGACTTTGTTGAGAGAAAGGAGGAGGCAGCGTAAAAATAGGGAATCTTTTC
AGATCTTTCTGGACGAGTTGCACGAGCATGGGCAGCTGCACTCTATGTCCTCTTGGATGGAGCTGTATCC
CACCATCAGCTCTGACATTCGCTTCACTAACATGCTGGGTCAGCCGGGATCAACTGCACTTGATCTTTTC
AAGTTTTATGTTGAAGATCTTAAAGCACGATATCATGATGAAAAGAAGATAATAAAAGACATTCTGAAGG
ATAAAGGATTTGTAGTTGAAGTAAACACTACTTTTGAAGATTTTGTGGCAATAATCAGTTCAACCAAAAG
ATCAACTACTTTGGATGCTGGAAATATCAAGTTGGCTTTCAATAGTTTACTAGAAAAGGCAGAAGCCCGT
GAACGTGAGAGAGAAAAAGAAGAGGCTCGGAAAATGAAACGGAAAGAGTCTGCCTTTAAGAGTATGTTGA
AACAGGCTACCCCTCCAATAGAACTGGATGCTGTCTGGGAAGATATCCGGGAAAGATTTGTAAAGGAACC
AGCGTTTGAGGATATAACTCTAGAATCTGAAAGAAAAAGAATATTTAAAGATTTCATGCATGTGCTTGAG
CATGAATGTCAGCATCATCATTCAAAGAACAAGAAACATTCTAAGAAATCTAAAAAGCACCATAGGAAAC
GCTCCCGCTCTCGATCGGGATCAGAGTCAGATGATGACGACAGCCATTCAAAGAAAAAAAGGCAGCGATC
AGAGTCTCATTCTGCTTCAGAGCGTTCGTCCAGTGCTGAGTCTGAGAGAAGTTACAAGAAGTCAAAAAAG
CATAAGAAGAAAAGCAAAAAGAGGAGGCATAAATCTGACTCTCCAGAATCAGATACTGAACGAGAAAAGG
ATAAAAAAGAAAAAGATCGGGACAGTGAAAAAGACAGAAGTAGACAGAGATCAGAATCAAAACACAAATC
ACCTAAGAAAAAGACTGGAAAGGATTCTGGTAACTGGGATACTTCTGGCAGTGAACTGAGTGAAGGGGAA
TTGGAAAAGCGCAGAAGAACCCTTTTGGAGCAACTGGATGATGATCAATAA

Translation (926 aa):
MCSGSGRRRSSLSPTMRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPM
GQMPGMMSSVMSGMMMSHMSQASMQPALPPGVNSMDVAAGAASGAKSMWTEHKSPDGRTYYYNTETKQST
WEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTIVAGGLITKSNLH
AMIKAEESSKQEECTTASTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAANANTSTTPTNTVGSVP
VAPEPEVTSIVATAVDNENTVTVSTEEQAQLANTTAIQDLSGDISSNTGEEPAKQETVSDFTPKKEEEES
QPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKE
EKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKE
QAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKE
EEEEKQKTLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLF
KFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAR
EREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLE
HECQHHHSKNKKHSKKSKKHHRKRSRSRSGSESDDDDSHSKKKRQRSESHSASERSSSAESERSYKKSKK
HKKKSKKRRHKSDSPESDTEREKDKKEKDRDSEKDRSRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGE
LEKRRRTLLEQLDDDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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