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Report for CCDS89416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89416.1 Public Mus musculus 19 Vti1a 23 108 98 CCDS HistoryNCBI Gene:53611Re-query CCDS DB by CCDS ID:89416.1Re-query CCDS DB by GeneID:53611See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89416.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000223690.1 ENSMUSP00000153629.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223690.1Link to Ensembl Protein Viewer:ENSMUSP00000153629.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223690Re-query CCDS DB by Protein ID:ENSMUSP00000153629
Original member Current member NCBI NM_001293685.1 NP_001280614.1 Accepted alive Link to Nucleotide Sequence:NM_001293685.1Link to Protein Sequence:NP_001280614.1Re-query CCDS DB by Nucleotide ID:NM_001293685Re-query CCDS DB by Protein ID:NP_001280614Link to BLAST:NP_001280614.1

Chromosomal Locations for CCDS 89416.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55316451 55316544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55321939 55321997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55328346 55328456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55380942 55381019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55387189 55387209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55391784 55391868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55498511 55498581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55499243 55499304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55623817 55623910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGTCTTCCGACTTCGAAGGGTACGAGCAGGACTTCGCAGTGCTCACTGCTGAGATCACCAGCAAGATTG
CA
AGGGTCCCTCGGCTCCCTCCCGATGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGA
G
GCCAGAGAACTGCTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTAT
AGC
AACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTTAAAAGGTCACGGATCG
CC
TACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAGTTGATAAA
A
TTACGTGAAGAGAGGGCACATCTGCTGGATAACACGGAGAGGCTGGAAAGGTCGTCTCGGAGACTAGAG
GCT
GGGTACCAGATAGCAGTGGAGACTGAGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACA
GA
GAAAAGATACAGCGGGCACGTGACCGACTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGAT
T
CTGACGGGGATGCTGCGAAGAATCATCCAGAACCGTATCCTGCTCGTCATCTTGGGGATCATCGTGGTC
ATC
GCCATCCTGACGGCCATCGCGTTTTTCGTCAAAGGACACTGA


Translation (224 aa):
MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMY
S
NRMRSYKQEMGKLETDF
KRSRIAYSDEVRNELLGDAGNSSENQLIKLREERAHLLDNTERLERSSRRLE
A
GYQIAVET
EQIGQEMLENLSHDREKIQRARDRLRDADANLGKSSRILTGMLRRIIQNRILLVILGIIVV
I
AILTAIAFFVKGH




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser