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Report for CCDS89393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89393.1 Public Mus musculus 19 Hps1 23 108 98 CCDS HistoryNCBI Gene:192236Re-query CCDS DB by CCDS ID:89393.1Re-query CCDS DB by GeneID:192236See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89393.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162061.1 ENSMUSP00000124209.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162061.1Link to Ensembl Protein Viewer:ENSMUSP00000124209.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162061Re-query CCDS DB by Protein ID:ENSMUSP00000124209
Original member Current member NCBI NM_001362410.1 NP_001349339.1 Accepted alive Link to Nucleotide Sequence:NM_001362410.1Link to Protein Sequence:NP_001349339.1Re-query CCDS DB by Nucleotide ID:NM_001362410Re-query CCDS DB by Protein ID:NP_001349339Link to BLAST:NP_001349339.1

Chromosomal Locations for CCDS 89393.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 42759179 42759307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42759706 42759850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42760364 42760429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42760510 42760644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42761012 42761073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42762096 42762275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42762393 42762560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42763795 42763844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42765913 42765982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42766130 42766216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42766710 42766833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42767118 42767278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42769606 42769714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42770754 42770896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42771117 42771254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42778122 42778238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGAAGTGCGTGTTGGTGGCCACCGAGGGCGCAGAGGTCCTCTTCTACTGGACAGATGAGGAGTTTGCTG
AGAGCCTCCGGCTGAAGCTCCAGCAGTCAGAGGATGAGGAAGAGGAGCTCCCTGTGCTGGAGGACCAGCT
CAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGATGGAGAAGCTCTCGGACACATATACC
TGCTTCTCAACAGAAAATGACAACCACCTGTATGTCCTGCATCTGTTTGGAGAGTACCTGTTCGTCGCCA
TCAACGGAGACCACAGTGAGAGCGAGGGGGACCTGCGGAGGAAACTGTGTGTGCTCAAGTATCTATTCGA
GGTGCACTTCGGGCTGGTGACTGTGGACGGCCAGCTCATCCGGAAGGAGCTTCGTCCACCCGACCTGGAA
GAGCGTGCCCGGGTGTGGAAGCACTTTCAGAGACTGCTGGGGACCTACAGCTACCTGCGGGACCGGGAGC
AGAGCTTTGCTGTGGAGGCAGTGGAGCGGCTCATTCACCCCCAGCTCTGCGAACAGAGCATCGAGACGCT
AGAGCGGCACGTGGTTCAAGCCATCAACGCCAGCCCCGAGCGGGGCGGTGAAGAGGTCCTGCACGCCTTC
CTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCCGGCCATGGTGCGAGCACCCTGCGCCCCGCAGACC
TCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGA
GGAGGATAGCGACAGCCCTCAGAGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGC
CAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACAGACACAGACAGCATCTCCCTCCCTGAAGAGT
ACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAGGTAGCCTCGTCTGGCTGGATGGTGGCACCCC
GCCCAGCGATGCTCTTCAGATGGCTGAGGACACCCCCGAGGGGCTGGCGTCTCACTCCCCAGAACTTCCC
AGCCCCAGAAGGATCTTCCTGGATGCCAACATAAAAGAAAACTACTGTCCCTTAGTGCCCCACACCATGT
ACTGCCTGCCCCTGTGGCCAGGCATCAACATGGTGCTGCTGACCAAGAGCCCCAGCACCCCACTGGCCCT
GATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGA
AGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAG
TTGGGCAGGAGATTCAGAACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATC
GTCCTGGGAGCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTC
CTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCA
TGAAGGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC
CTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCC
CCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAG
CCAAGGTATGGAGCCCAAGGACTCGTGTACTGAGACAGCACTCTGCCCTCTCTCTGAGCTGCTCCCACAC
CCCAGCCGAGTGGACAGGGGTGGTTTCCACTCAGGAAGCATCGTTCTCTGCTCTTCTGATTTAA

Translation (627 aa):
MKCVLVATEGAEVLFYWTDEEFAESLRLKLQQSEDEEEELPVLEDQLSTLLAPVIISSMTMMEKLSDTYT
CFSTENDNHLYVLHLFGEYLFVAINGDHSESEGDLRRKLCVLKYLFEVHFGLVTVDGQLIRKELRPPDLE
ERARVWKHFQRLLGTYSYLRDREQSFAVEAVERLIHPQLCEQSIETLERHVVQAINASPERGGEEVLHAF
LLVHCKLLAFYSGHGASTLRPADLLALILLVQDLQPSPGTTEEEEEEEDSDSPQRRPKSSQNIPVQQARS
QSTSVPTRSSRETDTDSISLPEEYFTPAPSPGDQSSGSLVWLDGGTPPSDALQMAEDTPEGLASHSPELP
SPRRIFLDANIKENYCPLVPHTMYCLPLWPGINMVLLTKSPSTPLALILYQLLDGFSLLEKKLKEGQEAG
SALRSQPFVADLRQKMDKFIKNRVGQEIQNTWLEFKSKAFSRSEPGSSWELLQVCGKLKRQLCVIYRLSF
LVTAPSRGGPHLPQHLQDRAQKLMKERLLDWKDFLLVKSRRNVTMVSYLEDFPGLVHFIYVDRTTGQMVA
PSLSPNEKMSSELGKGPLAAFVKAKVWSPRTRVLRQHSALSLSCSHTPAEWTGVVSTQEASFSALLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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