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Report for CCDS89285.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89285.1 Public Mus musculus 18 Slc66a2 23 108 98 CCDS HistoryNCBI Gene:66943Re-query CCDS DB by CCDS ID:89285.1Re-query CCDS DB by GeneID:66943See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89285.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000151677.8 ENSMUSP00000157569.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151677.8Link to Ensembl Protein Viewer:ENSMUSP00000157569.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151677Re-query CCDS DB by Protein ID:ENSMUSP00000157569
Original member Current member EBI ENSMUST00000134545.2 ENSMUSP00000157740.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000134545.2Link to Ensembl Protein Viewer:ENSMUSP00000157740.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000134545Re-query CCDS DB by Protein ID:ENSMUSP00000157740
Original member Current member NCBI NM_001164423.1 NP_001157895.1 Accepted alive Link to Nucleotide Sequence:NM_001164423.1Link to Protein Sequence:NP_001157895.1Re-query CCDS DB by Nucleotide ID:NM_001164423Re-query CCDS DB by Protein ID:NP_001157895Link to BLAST:NP_001157895.1
Original member Current member NCBI NM_001164424.1 NP_001157896.1 Accepted alive Link to Nucleotide Sequence:NM_001164424.1Link to Protein Sequence:NP_001157896.1Re-query CCDS DB by Nucleotide ID:NM_001164424Re-query CCDS DB by Protein ID:NP_001157896Link to BLAST:NP_001157896.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157895.1 134 Q80XM9-4 134 100% 0 0
NP_001157896.1 134 Q80XM9-4 134 100% 0 0

Chromosomal Locations for CCDS 89285.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 80256916 80257118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80263420 80263553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80272462 80272529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGGAAGCGGAAGGCTTGGGATGGCTTCTGGTCCCGCTGCACCAGCTGGTTTCCTGGGTGGCCGCTGGGG
CCATGGTCTTCGGAGGGGTAGTACCGTACATACCCCAATACAGGGACATCCGGAGGACTCAGAATGCCGA
CGGTTTCTCCACCCATGTGTGCCTGGTGCTATTGGTGGCCAATATTTTACGGATACTCTTTTGGTTCGGA
AGGCACTTCGAGTCCCCGCTCCTGTGGCAGAGCATAGTCATGATCCTTACGATGTTGCTCATGCTGAAGC
TCTGCACCGAGGTCCGCGTGGCCAATGAGCTGAACATCAAGCGCCGCTCCTTTGCAGCCACAGACAGTAA
GGATGAAGAACTCAGAGTGCCCCCCAGGCGGCCCTACCTGGGTATGTACTACTGA

Translation (134 aa):
MEAEGLGWLLVPLHQLVSWVAAGAMVFGGVVPYIPQYRDIRRTQNADGFSTHVCLVLLVANILRILFWFG
RHFESPLLWQSIVMILTMLLMLKLCTEVRVANELNIKRRSFAATDSKDEELRVPPRRPYLGMYY


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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