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Report for CCDS89282.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89282.1 Public Mus musculus 18 Haus1 23 108 98 CCDS HistoryNCBI Gene:225745Re-query CCDS DB by CCDS ID:89282.1Re-query CCDS DB by GeneID:225745See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89282.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000236234.1 ENSMUSP00000158336.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236234.1Link to Ensembl Protein Viewer:ENSMUSP00000158336.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236234Re-query CCDS DB by Protein ID:ENSMUSP00000158336
Original member Current member NCBI NM_001357531.1 NP_001344460.1 Accepted alive Link to Nucleotide Sequence:NM_001357531.1Link to Protein Sequence:NP_001344460.1Re-query CCDS DB by Nucleotide ID:NM_001357531Re-query CCDS DB by Protein ID:NP_001344460Link to BLAST:NP_001344460.1
Original member Current member NCBI NM_001357532.1 NP_001344461.1 Accepted alive Link to Nucleotide Sequence:NM_001357532.1Link to Protein Sequence:NP_001344461.1Re-query CCDS DB by Nucleotide ID:NM_001357532Re-query CCDS DB by Protein ID:NP_001344461Link to BLAST:NP_001344461.1
Original member Current member NCBI NM_001357533.1 NP_001344462.1 Accepted alive Link to Nucleotide Sequence:NM_001357533.1Link to Protein Sequence:NP_001344462.1Re-query CCDS DB by Nucleotide ID:NM_001357533Re-query CCDS DB by Protein ID:NP_001344462Link to BLAST:NP_001344462.1

Chromosomal Locations for CCDS 89282.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 77757703 77757753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77758470 77758517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77759437 77759508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77760468 77760533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77760907 77761030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77761982 77762116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77764073 77764208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77766864 77767038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77768344 77768418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGCCGGAATTACAAATGCGTGCTATCAAATACAGTATACCTGGGATATCCAACCCAGGACTTCCTGAAT
GTCAGGTCGCTGAGTGGTTGAAAAAGGTATTTGGAGACCATCCCATCCCACAATATGAGATGAACTCACG
GACGACAGAAATTTTATATCACCTTTCAGAACGCAACAGGGTCCGGGACAGGGACATCAGCCTGGTAATA
GAGGACTTAAAACAGAAAGCAAGTGAATATGAATCCGAAGCCAAACGTCTTGAAGACTTTCTCATGGAGA
GTGTGAATTTTTCACCTGCCAATCTGTCTAAGTCTGGTTCCCGGTTTCTGAATGCACTGGTAGACAGTGC
AATTGCCCTGGAAATAAAAGATACTTCACTAGCAAGCTTCATCCCCGCAGTGAATGATTTGACGTCTGAC
CTTTTTCGTACCAAATCCAAAAGCGAAGAAATGAAGCTTGAACTGGGAAAACTTGAAAAGAACCTGACGG
CAACGCTGGTGTTAGAAAAATGTCTACGAGAAGATCTCAAGAAAGCAGAGCTGCAACTGTCTGCAGAAAA
GGCCAAGGTTGACAGTCGCCTTCAGAATATGGACTTCCTAAAAGCGAAGGCAGCGGAGTTCCGGTTTGGA
ATCAAAGCTGCAGAGGAGCAACTTTCAGCCAGAGGCATGGATGCGTCTCTGTCTCATCGGTCACTAGCGG
CACTTTCAGAGAAACTCTCGGAGTTAAAAGAGCAGACTATACCCCTGAAGAAGAAGTTGGAGTCCTATTT
AGATTTAATGCCGAGTCCATCTCTTGCTCAACTGAAAATTGAAGAGGCAAAGAGAGAATTAGACGCCATA
GAGGCTGAACTTACCAAGAAAGTAGACATGATGGGCCTGTGA

Translation (293 aa):
MPELQMRAIKYSIPGISNPGLPECQVAEWLKKVFGDHPIPQYEMNSRTTEILYHLSERNRVRDRDISLVI
EDLKQKASEYESEAKRLEDFLMESVNFSPANLSKSGSRFLNALVDSAIALEIKDTSLASFIPAVNDLTSD
LFRTKSKSEEMKLELGKLEKNLTATLVLEKCLREDLKKAELQLSAEKAKVDSRLQNMDFLKAKAAEFRFG
IKAAEEQLSARGMDASLSHRSLAALSEKLSELKEQTIPLKKKLESYLDLMPSPSLAQLKIEEAKRELDAI
EAELTKKVDMMGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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