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Report for CCDS89207.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89207.1 Public Mus musculus 18 Sap130 23 108 98 CCDS HistoryNCBI Gene:269003Re-query CCDS DB by CCDS ID:89207.1Re-query CCDS DB by GeneID:269003See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89207.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000235017.1 ENSMUSP00000157127.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235017.1Link to Ensembl Protein Viewer:ENSMUSP00000157127.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235017Re-query CCDS DB by Protein ID:ENSMUSP00000157127
Original member NCBI NM_001357554.1 NP_001344483.1 Updated not alive Link to Nucleotide Sequence:NM_001357554.1Link to Protein Sequence:NP_001344483.1Re-query CCDS DB by Nucleotide ID:NM_001357554Re-query CCDS DB by Protein ID:NP_001344483
Current member NCBI NM_001357554.2 NP_001344483.1 Accepted alive Link to Nucleotide Sequence:NM_001357554.2Link to Protein Sequence:NP_001344483.1Re-query CCDS DB by Nucleotide ID:NM_001357554Re-query CCDS DB by Protein ID:NP_001344483Link to BLAST:NP_001344483.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344483.1 1057 Q8BIH0-1 1057 100% 0 0

Chromosomal Locations for CCDS 89207.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 31635988 31636099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31647041 31647276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31648134 31648292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31649545 31649656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31650491 31650615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31653502 31653626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31666341 31666488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31666636 31666726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31666905 31667009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31674355 31674496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31677356 31677477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31680369 31680671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31682007 31682184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31689398 31689502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31698522 31698880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31711198 31711446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31711609 31711734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31715341 31715444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31720657 31720770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31722172 31722330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3174 nt):
ATGAGTTCCCAGCAGTTTCCTCGGTTAGGAACCCCTTCCCCTGGGCTTAGCCAGCCACCTTCACAGATTG
CAAGCAGTGGTTCCGCAGGACTGATAAACCAAGTTGCCACAGTTAATGATGAGGCTGGCCGAGATGCTGA
TGTTGGTACCAGGGAGCACGTGGGCCCTAGCAGCTCCCTGCCGCCCCGGGAAGAGAAGCAGGAGCCAGTT
GTGGTAAGGCCCTATCCACAGGTACAGATGCTGCCTGCACACCATGCTGTCGCCTCAGCCACCCCTGTCG
CAGTGACAGCCCCGCCAGCACACCTGACACCAGCAGTACCACTCTCTTTTTCGGAAGGACTTATGAAGCC
GCCCCCGAAGCCTACCATGCCTAGCCGTCCCATTGCGCCTGCTCCCCCTTCTACCATGTCACTTCCCCCG
AAAGTTCCCGGGCAGGTTACTGTTACCATGGAGAGCAGCATCCCTCAAGCTTCAGCCATTCCCGTGGCAA
CAATCAGTGGACAACAGGGGCATCCCAGTAACCTGCATCACATTATGACCACAAATGTGCAGATGTCCAT
AATCCGCAGCAACGCTCCCGGGCCCCCACTTCACATTGGAGCTTCCCACTTACCTCGAGGTGCAGCTGCT
GCCGCTGTGATGTCCAGCTCTAAAGTAACTACAGTCCTGAGGCCAACTTCACAGCTGCCAAATGCTGCTA
CGGCGCAGCCAGCAGTACAGCACCTCATTCACCAGCCAATCCAGTCTCGGCCACCTGTGACCACCTCCAG
TACAATCCCTCCTGCTGTAGTAGCAACAGTCTCAGCCACCAGAGCGCAGTCTCCTGTCATCACTACGACA
GCGGCCCACGCGGCTGACTCGACGCTCAGTCGGCCCACTTTATCTATCCAGCATCCACCATCTGCAGCCA
TTAGTATCCAGCGTCCTGCACAGTCTCGAGATGTGACAACAAGAATCACACTACCTTCTCATCCTGCGTT
AGGGACTCCGAAACAGCAGCTCCATACAATGGCTCAGAAAACCATCTTTAGTACTGGCACACCAGTGGCT
GCAGCTACAGTAGCACCTATTCTGGCAACCAACACGCTTCCTTCAACAACCACAGCTGGATCTGTGTCGC
ACACACAAGCTCCCACAAGTACAATTGTTACCATGACAATGCCCTCCCATTCATCCCATGCTACTGCTGT
GACCACTTCAAATATCCCAGTTGCTAAGGTGGTGCCCCAGCAGATCACACACACTTCCCCTCGGATCCAG
CCTGATTACCCTCCAGAGAGGAGTAGCCTGATTCCCATTTCCGGCCATCGGGCCTCTCCAAATCCAGTGG
CCATGGAAACCCGAAATGACAACAGACCTTCCGTTCCTGTTCAGTTCCAGTACTTCTTGCCAACTTACCC
ACCCTCTGCCTACCCGCTGGCTGCACACACCTACACCCCCATCACCAGCTCTGTGTCCACTATCCGGCAG
TACCCAGTTTCTGCTCAAGCCCCAAACTCCACCATCACAGCTCAAACTGGTGTTGGTGTAGCATCTACAG
TCCACCTGAACCCCATGCAGCTGATGACAGTGGATGCCTCACATGCCCGACATATCCAGGGGATCCAGCC
AGCACCCATCAGTACACAGGGAATCCAGCCAGCCCCCATTGGGACATCAGGGATCCAGCCAGCACCAATT
GGCACCCCAGGAATCCATTCAGCAGCCCCAATCAACACTCAGGGGCTTCAGCCAGCAGCAATGGCTAATC
AGCAGCCACAGCCTGAGGGGAAAACCTCAGCAGTGGTGTTGGCAGATGGAGCTACAATTGTAGCCAACCC
TATTAGCAACCCATTCAGTGCTGCTCCAGCGGCAACCACAGTGGTCCAGACACACAGTCAGAGTGCTAGC
ACCAACACACCAGCCCAGGGCTCTTCTCCCCGGCCCAGCATACTGCGGAAGAAACCTGCCACAGATGGGA
TGGCAGTCCGGAAAACTCTCCTCCCTCCTCAGCCTCCTGACGTGGCTACTCCTCGAGTAGAAAGCTCTAT
GCGGAGTGCTTCTGGGTCACCTAGACCTGCAGGTGCCAAACCTAAATCCGAAGTGCATGTGTCTATAGCC
ACTCCAGTTACAGTGTCCTTGGAGACCATATCCAATCAAAATGCCGAACAGCCTACCGTTGCTGTCCCTC
CGACTGCCCAGCAGCCTCCACCGACCATTCCCAGCATGATTGCGGCAGCCAGTCCTCCATCCCAACCAGC
CATTGCCCTTTCCACCATTCCCGGAGCCGTGCCTGTCACTCCACCCATCACCACCATTGCTGCCACACCA
ACGCTGTCAGCCCCAGTGGGCGGCACTCCTTCCACGGTCCTGGGGCCTCCTGTTCCTGAGATCAAAGTGA
AGGAAGAAGCGGAGCCAGTGGACATCACCAGGCCTGTCTCCACAGTCCCTCCTCTGGCCACCAACACGGT
GTCTCCATCTCTTGCTTTGCTGGCAAGCAACCTGTCCATGCCTCCAAGTGACCTCCCACCTGGTGCCTCC
CCAAGGAAAAAGCCTCGAAAGCAGCAGCACGTGATCTCGACAGAGGAGGGGGATATGATGGAGACAAACA
GCACTGACGATGAGAAGTCCGCTGCCAAGAGTCTCCTGGTAAAGGCTGAGAAGCGCAAGTCTCCTCCCAA
AGAGTACATTGATGAGGAAGGTGTGAGGTATGTCCCAGTGCGACCCAGACCTCCCATTACTTTGCTACGT
CACTATCGGAACCCCTGGAAAGCTGCTTATCACCACTTTCAGAGGTACAGTGACGTCCGGGTCAAAGAGG
AGAAGAAAGCTATGCTACAGGAAATAGCTAATCAGAAAGGAGTGTCCTGCCGTGCCCAGGGCTGGAAAGT
TCACCTCTGTGCTGCCCAGTTACTACAGCTGACAAATCTAGAACACGACGTTTATGAAAGACTCACCAAC
CTACAGGAAGGGATTATCCCAAAGAAAAAGGCAGCGACTGATGACGATCTACATCGAATAAATGAGCTGA
TACAGGGAAACATGCAGCGGTGTAAACTAGTGATGGACCAAATCAGTGAGGCCAGAGACTCTATGCTTAA
GGTTCTGGATCACAAGGACCGGGTGCTGAAGCTGCTCAACAAGAACGGGACGGTCAAGAAGGTGTCAAAG
TTGAAGCGGAAGGAGAAGGTGTAG

Translation (1057 aa):
MSSQQFPRLGTPSPGLSQPPSQIASSGSAGLINQVATVNDEAGRDADVGTREHVGPSSSLPPREEKQEPV
VVRPYPQVQMLPAHHAVASATPVAVTAPPAHLTPAVPLSFSEGLMKPPPKPTMPSRPIAPAPPSTMSLPP
KVPGQVTVTMESSIPQASAIPVATISGQQGHPSNLHHIMTTNVQMSIIRSNAPGPPLHIGASHLPRGAAA
AAVMSSSKVTTVLRPTSQLPNAATAQPAVQHLIHQPIQSRPPVTTSSTIPPAVVATVSATRAQSPVITTT
AAHAADSTLSRPTLSIQHPPSAAISIQRPAQSRDVTTRITLPSHPALGTPKQQLHTMAQKTIFSTGTPVA
AATVAPILATNTLPSTTTAGSVSHTQAPTSTIVTMTMPSHSSHATAVTTSNIPVAKVVPQQITHTSPRIQ
PDYPPERSSLIPISGHRASPNPVAMETRNDNRPSVPVQFQYFLPTYPPSAYPLAAHTYTPITSSVSTIRQ
YPVSAQAPNSTITAQTGVGVASTVHLNPMQLMTVDASHARHIQGIQPAPISTQGIQPAPIGTSGIQPAPI
GTPGIHSAAPINTQGLQPAAMANQQPQPEGKTSAVVLADGATIVANPISNPFSAAPAATTVVQTHSQSAS
TNTPAQGSSPRPSILRKKPATDGMAVRKTLLPPQPPDVATPRVESSMRSASGSPRPAGAKPKSEVHVSIA
TPVTVSLETISNQNAEQPTVAVPPTAQQPPPTIPSMIAAASPPSQPAIALSTIPGAVPVTPPITTIAATP
TLSAPVGGTPSTVLGPPVPEIKVKEEAEPVDITRPVSTVPPLATNTVSPSLALLASNLSMPPSDLPPGAS
PRKKPRKQQHVISTEEGDMMETNSTDDEKSAAKSLLVKAEKRKSPPKEYIDEEGVRYVPVRPRPPITLLR
HYRNPWKAAYHHFQRYSDVRVKEEKKAMLQEIANQKGVSCRAQGWKVHLCAAQLLQLTNLEHDVYERLTN
LQEGIIPKKKAATDDDLHRINELIQGNMQRCKLVMDQISEARDSMLKVLDHKDRVLKLLNKNGTVKKVSK
LKRKEKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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