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Report for CCDS89091.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89091.1 Public Mus musculus 17 H2-M9 23 108 98 CCDS HistoryNCBI Gene:14997Re-query CCDS DB by CCDS ID:89091.1Re-query CCDS DB by GeneID:14997See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89091.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087165.10 ENSMUSP00000084409.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087165.10Link to Ensembl Protein Viewer:ENSMUSP00000084409.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000087165Re-query CCDS DB by Protein ID:ENSMUSP00000084409
Original member Current member NCBI NM_001368317.1 NP_001355246.1 Accepted alive Link to Nucleotide Sequence:NM_001368317.1Link to Protein Sequence:NP_001355246.1Re-query CCDS DB by Nucleotide ID:NM_001368317Re-query CCDS DB by Protein ID:NP_001355246Link to BLAST:NP_001355246.1

Chromosomal Locations for CCDS 89091.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36639653 36639657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36640448 36640558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36641534 36641809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36642071 36642340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36642572 36642644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGAAGAACTTTGAATCCCAGCCTCTCCTCCTGCTGTTCATGGTCACCTTGGTCATCGCAAAGCATCCAA
ATGGTTCACACACTCTGAGATTTGTGTCCACCTTCTTATCATGGCCTCGACATCTGGAGCTGCAGTTTAT
CTTTCTCATCTATGTGGATGAAACACAGATCATGGGATTCAACAGTATATCAGAGAGTCAGAGGATGGAG
AGTCGGGTACCATGGTTGAATGAGCTAAATGCAGAGTTTTGGGAGTTGGCAACACAGGATGTCCTGAAAG
AAAAAAGCTTCGTGACAGGAATTATGAACAAATTGCTCCACATCTATAATGATAGCATGACTGGATATCA
CATAATCCAGGAAACATATGGCTGCCAAGTCAAGCAGAGAACGTACTTCAGTCACGCCTTCATGGAATTA
TTATTCGATACACATGATTACATCACACTGAATGAGGATCTGCAAACATGGAGAGCGGTTGGCAAGGCAG
CTGAGATAGTTAAGGAAGAGTGGGAGAAAATAAATCTTGTAAAGTCGTCAAAGTCTTTCCTGCTGGGTGC
ATGTGTGGAGGGGCTCCTTCAATACCTGAACTTTGGGAAGAAGTATTTGCTGAGAACAGATCCTCCTGAA
CCCACCATCCCCTTCCTGCCTATGATTATTGCTCTGGTTCTTGGGGCTCTGCTTATGGGATCAGTGATGA
CTTTTCTTATATGGAAGAGAAGGACTAGAGGTTAA

Translation (244 aa):
MKNFESQPLLLLFMVTLVIAKHPNGSHTLRFVSTFLSWPRHLELQFIFLIYVDETQIMGFNSISESQRME
SRVPWLNELNAEFWELATQDVLKEKSFVTGIMNKLLHIYNDSMTGYHIIQETYGCQVKQRTYFSHAFMEL
LFDTHDYITLNEDLQTWRAVGKAAEIVKEEWEKINLVKSSKSFLLGACVEGLLQYLNFGKKYLLRTDPPE
PTIPFLPMIIALVLGALLMGSVMTFLIWKRRTRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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