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Report for CCDS89002.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89002.1 Public Mus musculus 17 Gm7072 23 108 98 CCDS HistoryNCBI Gene:631624Re-query CCDS DB by CCDS ID:89002.1Re-query CCDS DB by GeneID:631624See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89002.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000233465.1 ENSMUSP00000156489.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233465.1Link to Ensembl Protein Viewer:ENSMUSP00000156489.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233465Re-query CCDS DB by Protein ID:ENSMUSP00000156489
Original member Current member NCBI NM_001357991.1 NP_001344920.1 Accepted alive Link to Nucleotide Sequence:NM_001357991.1Link to Protein Sequence:NP_001344920.1Re-query CCDS DB by Nucleotide ID:NM_001357991Re-query CCDS DB by Protein ID:NP_001344920Link to BLAST:NP_001344920.1
Original member Current member NCBI NM_001357992.1 NP_001344921.1 Accepted alive Link to Nucleotide Sequence:NM_001357992.1Link to Protein Sequence:NP_001344921.1Re-query CCDS DB by Nucleotide ID:NM_001357992Re-query CCDS DB by Protein ID:NP_001344921Link to BLAST:NP_001344921.1

Chromosomal Locations for CCDS 89002.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 22286989 22288901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 22289769 22289895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 22292408 22292437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2070 nt):
ATGAACGCCTCTCTCCTAAATGCTCCTCAGGGTCAGTTAACATTCAAGGATGTGGCTGTTGACTTCTCAC
AGGAGGAATGGGAATGTCTTGACTGTGCTCAGAGGGCATTGTACATGGATGTGATGTTGGAGAATTACAA
TAATCTGCTTTTTGTGGAGAATCAATACATGTGTCCTGAATTTGAGAACATGTTGAATCAAGATCTACAG
CATATTGTCCACGAACATGCAAATACCCAAGTGAAATCTTATGAATGTCATGAGCTTGACAAAATCATCC
ATGAGTCCACAGGAAGTGCACCTTCTAAAACTAACCTCAGGGCTACATCTGTTGAATCATCAAACCTAAG
CAGACATGAAACTGAAAACAACAGAGAACCTTGCAAAGATAAAAACCATGTAAACTGTTTCAATTTGTGC
TCTACCATTAGTCTAAATCAAGGAATCAACATAGGAAAGAAAGAATACAATGGTGCAAAGCTTGATAAGG
TTTTTGACTCTAAAGAAACCCTCATATTGAAACAAACCAAAAGTGTAAAGAAACCTTACAAATGTAGTGA
ATGTGAGAAATGCTTCATTCAAGTTGGTGATCTTAGAAAACATCAGAGAATTCATAAAGGAGAGAAACCT
TACAAATGTAATGAATGTGAAAAATGCTTTAGCTACAAAAGCAGCCTTAGAACTCATCAGAGAATTCATA
CAGGAGAGAATCCTTACAAATGTAGTGAATGTGACAAATGCTTTTCCCACAAAGGCAGTCTTAGTATTCA
TCAGATGTATCATACAGGCAAGAAACCTTACAAATGTAGTGAATGTGAGAAATGCTTCATTCAAGTTGGT
GATCTTAGAAGACATGAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAATGAATGTGAAAAATGCT
TTAGCTCCAAAACCAACCTTAGAACTCATCAGAGAATTCATACAGGAGAGAAGCCGTACAAATGTAGTGA
ATGTGACAAAGGCTTTACTCTAAAATGCAGTCTTATCATTCATCAAGTGTATCATACAGGCAAGAAACCT
TACAAATGTAGTGAATGTGAGAAATGCTTCATTCAAGTTGGTGACCTTAGAAAACATCAGAGAATTCATA
CAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAAAGCTTTACCCAAAAAGGCAGTCTTAGTATTCA
TCAGAGAATTCATGCAGGAGAGAAACCTTACAGATGTAGTGAATGTGACAAAGGCTTTACTCTAAAATGC
AGTCTTATCATTCATCAAATAATTCATACAGGAGAGAAAACTTACAAATGTAGTGAATGTGACAAATGCT
TTTCCCACAAAGGCAGTCTTAAAGTTCATCTGAGAATTCATACAGGAGAAAATCTTTACAAATGTAGTGA
GTGTGACAAATGCTTTACAAAGAAATGGCGTCTTACAAGTCATCAGACAATTCATACAGGAGAGAAACCT
TACAAATGCAGTGAATGTGACAAATCTTTTACCCTGAAAGGCAATCTTAGAGATCATCAACGAATTCATA
CAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATACTACACTCGAAAAAGCCATCTTATTGTTCA
TCAGAAAATTCATGCTGGAGAAAAACCCTACAAATGTAGTGAATGTGACAAATACTACACTCGAAAAAGC
CATCTTATTGTTCATCAGCGCATTCACATAGGAGAAAAACCTTACAAATGCAGTGAATGTAACAAATGCT
TTACCAACAAATATCATCTTAGAACTCATCAGAGAATACATTCAGCTAATAAACCTTACAAATGTAGTGA
ATGTGACAAATGCTTTACTGAAAAATACAGACTTATTATTCATCAGAGAATTCATACAGGAGAGAAACCT
TACAAATGTAGTGAATGTGACAAGTACTTTACCCGAAAAAGCAGTCTTAATGTGCACCAGAGAGTTCATA
CAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTTCTCTTAAAGGTGATCTTAGAAAACA
TCAGAGAATTCATACAGGAGAAAGAACCTTACAGATGTGA

Translation (689 aa):
MNASLLNAPQGQLTFKDVAVDFSQEEWECLDCAQRALYMDVMLENYNNLLFVENQYMCPEFENMLNQDLQ
HIVHEHANTQVKSYECHELDKIIHESTGSAPSKTNLRATSVESSNLSRHETENNREPCKDKNHVNCFNLC
STISLNQGINIGKKEYNGAKLDKVFDSKETLILKQTKSVKKPYKCSECEKCFIQVGDLRKHQRIHKGEKP
YKCNECEKCFSYKSSLRTHQRIHTGENPYKCSECDKCFSHKGSLSIHQMYHTGKKPYKCSECEKCFIQVG
DLRRHERIHTGEKPYKCNECEKCFSSKTNLRTHQRIHTGEKPYKCSECDKGFTLKCSLIIHQVYHTGKKP
YKCSECEKCFIQVGDLRKHQRIHTGEKPYKCSECDKSFTQKGSLSIHQRIHAGEKPYRCSECDKGFTLKC
SLIIHQIIHTGEKTYKCSECDKCFSHKGSLKVHLRIHTGENLYKCSECDKCFTKKWRLTSHQTIHTGEKP
YKCSECDKSFTLKGNLRDHQRIHTGEKPYKCSECDKYYTRKSHLIVHQKIHAGEKPYKCSECDKYYTRKS
HLIVHQRIHIGEKPYKCSECNKCFTNKYHLRTHQRIHSANKPYKCSECDKCFTEKYRLIIHQRIHTGEKP
YKCSECDKYFTRKSSLNVHQRVHTGEKPYKCSECDKCFSLKGDLRKHQRIHTGERTLQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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