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Report for CCDS88897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88897.1 Public Mus musculus 16 Tbx1 23 108 98 CCDS HistoryNCBI Gene:21380Re-query CCDS DB by CCDS ID:88897.1Re-query CCDS DB by GeneID:21380See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88897.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009241.6 ENSMUSP00000009241.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009241.6Link to Ensembl Protein Viewer:ENSMUSP00000009241.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000009241Re-query CCDS DB by Protein ID:ENSMUSP00000009241
Original member NCBI NM_001285472.1 NP_001272401.1 Updated not alive Link to Nucleotide Sequence:NM_001285472.1Link to Protein Sequence:NP_001272401.1Re-query CCDS DB by Nucleotide ID:NM_001285472Re-query CCDS DB by Protein ID:NP_001272401
Current member NCBI NM_001285472.2 NP_001272401.1 Accepted alive Link to Nucleotide Sequence:NM_001285472.2Link to Protein Sequence:NP_001272401.1Re-query CCDS DB by Nucleotide ID:NM_001285472Re-query CCDS DB by Protein ID:NP_001272401Link to BLAST:NP_001272401.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272401.1 479 P70323-1 479 99.7912% 0 1

Chromosomal Locations for CCDS 88897.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 18581993 18582456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18582724 18582824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18582907 18582974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18583419 18583574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18584084 18584255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18585035 18585136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18586536 18586878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18587987 18588020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGCACTTCAGCACAGTCACCAGGGACATGGAAGCCTTCGCAGCCAGCAGTCTGAGCGGCCTGGGATCCC
CGTCGCCTGGCGCCGACCCGTTCGGCCCTCGCGAGCCGCCGCCACCGCGCTACGATCCGTGCGCTGCAGT
CCCCGGTGCCCCGGGCCCGCCGCCGCCGCGCGCCTATCCTTTCGCGCCCGCCCCCGGGGCGGCTGGCAGC
TCGGCGGCGGAGTCCGAGGGTCCGGGGGCTAGCCGCGCGGCTGCGGTCAAGGCTCCGGTGAAGAAGAACC
CGAAGGTGGCCAGCGTGAGCGTGCAGCTGGAGATGAAGGCGCTGTGGGACGAGTTCAATCAGCTGGGCAC
CGAGATGATCGTCACCAAGGCAGGCAGACGAATGTTCCCCACGTTCCAAGTGAAGCTTTTTGGAATGGAT
CCCATGGCCGACTACATGCTGCTCATGGACTTTGTGCCCGTAGATGACAAGCGCTACCGGTATGCTTTCC
ATAGCTCCTCCTGGCTGGTGGCCGGCAAGGCAGATCCTGCTACACCTGGCCGAGTACACTACCACCCGGA
CTCGCCGGCTAAGGGCGCACAGTGGATGAAACAGATTGTGTCTTTCGACAAGCTGAAACTGACCAATAAC
CTGCTGGATGACAATGGCCATATTATTCTCAACTCCATGCACAGATATCAGCCCCGATTCCATGTTGTCT
ATGTGGACCCTCGAAAAGACAGTGAGAAATATGCAGAGGAGAACTTCAAAACTTTTGTGTTTGAGGAGAC
ACGCTTCACTGCAGTCACTGCCTACCAGAATCACCGGATCACGCAGCTTAAGATTGCCAGCAACCCCTTC
GCCAAAGGCTTCCGGGATTGCGACCCGGAGGACTGGCCCCGGAACCACCGGCCCGGAGCGCTGCCGCTCG
TGAGTGCCTTTGCTCGCTCTCGGAATCCCGTGGCTTCCCCCACGCAGCCCAATGGCTCAGACAAAGACGC
TGCAGAAGCCCGGCGCGAGTTCGACCGTGACTCCGGACCCGCAGCGCTCGGCGACGCTACGCACCCGCCG
CAGCTGCTGGCGCGCGTGCTGAGCCCCGCACTGCCCGGGCCTGGCGGCCTCGTCCCGCTACCCGGCGGAT
CCGGAGGCCGCCACAGTCCCCCGCACGCCGATCTGCGCCTGGAGGCGCCGGGCGCGTCCGAGCCGCTGCA
CCACCATCCCTACAAGTACCCGGCCGCCGCCTACGACCACTACCTCGGGGCCAAGAGCCGGCCGGCGCCC
TACCCGCTGCCAGGCCTGCGCGGCCACGGCTACCACCCGCACGCGCACCCGCACGCGCACCCGCACCATC
ACCACCACCCCGCGGTGAACCCGGCCGCCGCCGCCGCTGCTGCCGCAGCAGCCAACGTGTACTCGTCGGC
GGCCGCGCCGCCCGGTGCCTACGACTACTGCCCCAGATAG

Translation (479 aa):
MHFSTVTRDMEAFAASSLSGLGSPSPGADPFGPREPPPPRYDPCAAVPGAPGPPPPRAYPFAPAPGAAGS
SAAESEGPGASRAAAVKAPVKKNPKVASVSVQLEMKALWDEFNQLGTEMIVTKAGRRMFPTFQVKLFGMD
PMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGKADPATPGRVHYHPDSPAKGAQWMKQIVSFDKLKLTNN
LLDDNGHIILNSMHRYQPRFHVVYVDPRKDSEKYAEENFKTFVFEETRFTAVTAYQNHRITQLKIASNPF
AKGFRDCDPEDWPRNHRPGALPLVSAFARSRNPVASPTQPNGSDKDAAEARREFDRDSGPAALGDATHPP
QLLARVLSPALPGPGGLVPLPGGSGGRHSPPHADLRLEAPGASEPLHHHPYKYPAAAYDHYLGAKSRPAP
YPLPGLRGHGYHPHAHPHAHPHHHHHPAVNPAAAAAAAAAANVYSSAAAPPGAYDYCPR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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