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Report for CCDS88891.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88891.1 Public Mus musculus 16 Med15 23 108 98 CCDS HistoryNCBI Gene:94112Re-query CCDS DB by CCDS ID:88891.1Re-query CCDS DB by GeneID:94112See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88891.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000232645.1 ENSMUSP00000156242.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232645.1Link to Ensembl Protein Viewer:ENSMUSP00000156242.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232645Re-query CCDS DB by Protein ID:ENSMUSP00000156242
Original member Current member NCBI NM_001285886.1 NP_001272815.1 Accepted alive Link to Nucleotide Sequence:NM_001285886.1Link to Protein Sequence:NP_001272815.1Re-query CCDS DB by Nucleotide ID:NM_001285886Re-query CCDS DB by Protein ID:NP_001272815Link to BLAST:NP_001272815.1

Chromosomal Locations for CCDS 88891.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17652127 17652263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17652709 17652807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17653191 17653357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17653445 17653605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17653925 17653991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17655014 17655077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17655147 17655281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17655444 17655571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17655678 17655805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17673069 17673398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17674405 17674658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17683159 17683188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17685453 17685504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17697607 17697694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17698077 17698156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1920 nt):
ATGAAGACATTACTTGACATACACAGACTCTTGCCTTGCGAGGATTGGGATGTGGCTTGTGTGGACTGTT
CATTTTATAGTGAGGATGCCATGAGGAAAGCTGGTGTGGCCCACAGTAAATCTAGCAAGGATATGGAGAG
TCATGTGTTCCTGAAGGCCAAGACCCGGGATGAGTATCTTTCCCTTGTGGCCCGACTCATTATCCATTTC
CGAGATATTCATAACAAGAAATCCCAAGCTTCTGTCAGTGCTCAGCTGCAGCTCCAGCAAGTGGCATTGC
AGCAACAGCAGCAGCAGCAACAACAACAGCAATTCCAGCAACAGCAGGCAGCACTGCAGCAACAGCAGCA
ACAGCAGCAGCAGCAACAGCAGCAACAGCAGTTCCAGGCACAACAGAATGCCATGCAGCAACAGTTCCAA
GCAGTAGTGCAGCAGCAGCAGCTTCAGCAGCAGCAGCAGCAGCAGCACCTGATTAAGTTGCATCATCAAA
GCCAGCAACAACAGATACAACAGCAGCAACTGCAGAGGATGGCACAGTTGCAGCTGCAGCAACAGCAACA
GCAGCAACAGCAGCAGGCTTTGCAGGCCCAGCCACCAATGCAGCAGCCATCAATGCAGCAGCCACAGCCT
CCCCCTTCTCAGGCCCTACCCCAGCAGCTGTCACAGCTGCATCATCCACAGCATCACCAGCCACCACCTC
AGGCTCAGCAGTCCCCCATTGCTCAAAACCAACCACCACAGATCCCACCACAGTCACAGAGCCAGCCTTT
GGTGTCACAAGCACAAGCCCTTCCTGGACCGATGCTGTATGCTGCCCAACAGCAGCTGAAATTTGTCAGC
CAAAGCAGCCTCACCATGCTGTCCTCACCGTCACCAGGCCAGCAGGTGCAGACCCCACAGTCGATGCCAC
CTCCCCCACAGCCGTCCCCACAACCTGGCTCACAGCCCAACTCTAATGTCAGCTCCGGCCCTGCCCCATC
TCCCAGCAGCTTCCTGCCTAGCCCTTCACCACAGCCTTCTCAGAGCCCAGTGACAGCACGCACCCCACAG
AACTTCAGCGTTCCTTCCCCTGGACCTTTAAACACCCCTGTGAACCCCAGCTCTGTCATGAGCCCAGCTG
GCTCTAGCCAGGCTGAGGAGCAGCAGTACCTGGACAAGCTGAAGCAATTGTCCAAGTACATCGAGCCCCT
GCGACGCATGATCAACAAGATCGACAAGAATGAAGACAGAAAAAAGGACTTAAGTAAGATGAAGAGCCTG
CTGGACATCCTCACCGACCCCTCGAAGAGGTGTCCCCTGAAGACCCTGCAAAAGTGTGAGATTGCGCTGG
AGAAGCTCAAGAATGACATGGCAGTGCCCACACCCCCACCACCCCCAGTTCTTCCAACCAAACAGCAGGA
CCTGTGCCAACCACTCCTAGATGCAGTCCTGGCCAACATCCGTTCACCTGTCTTCAACCATTCCCTGTAC
CGCACATTTGTGCCAGCCATGATGGCCATCCATGGCCCACCTATCGTGTCGCCAGTGGTGTGTTCCCGGA
AGCGCCGGTTTGAGGAGGATGAGCGGCAGAGCATACCCAATGTGCTGCAAGGTGAAGTGGCAAGGCTGGA
TCCCAAGTTCCTGGTGAACTTGGACCCTTCTCACTGCAGCAACAACGGTACTGTCCACCTGATCTGCAAG
CTGGATGATAAGGACCTCCCTAGTGTGCCACCACTGGAGCTCAGTGTGCCTGCTGACTACCCTGCCCAGA
GCCCAATGTGGATCGACCGTCAGTGGCAATATGATGCCAACCCCTTTCTGCAGTCAGTGCACCGGTGCAT
GACCTCAAGGCTGCTGCAGCTCCCTGACAAGCACTCGGTCACAGCGCTGCTCAACACCTGGGCCCAGAGC
ATCCACCAGGCCTGCCTCTCAGCTGCCTAG

Translation (639 aa):
MKTLLDIHRLLPCEDWDVACVDCSFYSEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHF
RDIHNKKSQASVSAQLQLQQVALQQQQQQQQQQQFQQQQAALQQQQQQQQQQQQQQQFQAQQNAMQQQFQ
AVVQQQQLQQQQQQQHLIKLHHQSQQQQIQQQQLQRMAQLQLQQQQQQQQQQALQAQPPMQQPSMQQPQP
PPSQALPQQLSQLHHPQHHQPPPQAQQSPIAQNQPPQIPPQSQSQPLVSQAQALPGPMLYAAQQQLKFVS
QSSLTMLSSPSPGQQVQTPQSMPPPPQPSPQPGSQPNSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQ
NFSVPSPGPLNTPVNPSSVMSPAGSSQAEEQQYLDKLKQLSKYIEPLRRMINKIDKNEDRKKDLSKMKSL
LDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVLPTKQQDLCQPLLDAVLANIRSPVFNHSLY
RTFVPAMMAIHGPPIVSPVVCSRKRRFEEDERQSIPNVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICK
LDDKDLPSVPPLELSVPADYPAQSPMWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQS
IHQACLSAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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