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Report for CCDS88873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88873.1 Public Mus musculus 16 Ubn1 23 108 98 CCDS HistoryNCBI Gene:170644Re-query CCDS DB by CCDS ID:88873.1Re-query CCDS DB by GeneID:170644See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88873.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000229126.1 ENSMUSP00000155263.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229126.1Link to Ensembl Protein Viewer:ENSMUSP00000155263.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229126Re-query CCDS DB by Protein ID:ENSMUSP00000155263
Original member Current member NCBI NM_001356320.2 NP_001343249.1 Accepted alive Link to Nucleotide Sequence:NM_001356320.2Link to Protein Sequence:NP_001343249.1Re-query CCDS DB by Nucleotide ID:NM_001356320Re-query CCDS DB by Protein ID:NP_001343249Link to BLAST:NP_001343249.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343249.1 1105 Q4G0F8-2 1105 100% 0 0

Chromosomal Locations for CCDS 88873.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 5055116 5055364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5061982 5062068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5062535 5062630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5062940 5063074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5063673 5063776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5064348 5064786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5070649 5070719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5072054 5072183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5072307 5072425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5073009 5073137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5073322 5073468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5074322 5074372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5074470 5074512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5076892 5078115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5081418 5081661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5084056 5084105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3318 nt):
ATGTCGGAGCCCCACAGGGTCCAGTTCACCTCTGTCCCAGGTTCTTTGAATCCTGCATTTTTGAAGAAGT
CCAGGAAAGAGGAAGTTGGAGGAACAGAACAGCATCAAGACTGTGAGCCAGCTGCAGCAGCTGTTCGGAT
TACACTCACTCTCTTTGAACCAGATCACAAACGGTGTCCAGAGTTCTTCTACCCAGAGTTGGTAAAGAAT
ATCCGCGGGAAGGTAAAAGGCCTTCATCCTGGAGACAAGAAAAAAGATGTCTTGGATCCTTTCAATGATG
AAGAAAAAGAAAGGCATAAGGTGGAGGCCCTTGCACGGAAATTTGAAGAAAAATATGGTGGAAAGAAACG
TAGGAAAGACCGAATACAGGACTTGATTGATATGGGGTATGGCTATGATGAATCGGATTCTTTCATCGAT
AACTCTGAGGCGTATGATGAACTTGTTCCTGCTTCTTTGACTACAAAGTATGGAGGATTTTACATCAACT
CAGGAACCTTGCAGTTTAGACAAGCTTCAGAATCTGAAGATGACTTCATTAAAGAAAAGAAGAAAAAATC
TCCGAAGAAGCGGAAGTTGAAGGAAGGTGGTGAAAAGATAAAAAAGAAGAAAAAAGATGACACTTACGAC
AAGGAGAAGAAATCGAAAAAGTCCAAGTTTTCCAAAGCCGGCTTCACAGCCCTCAATGCCAGTAAGGAGA
AAAAGAAGAAGAAGTACTCTGGGTCATTAAGCGTTAGAGAGATGCTCAAGAAATTTCAGAAGGAGAAAGA
GGCTCAGAAAAAAAGGGAGGAGGAGCATAAACCTGTAGCTGTGTCATCAATAGAAGCTCAGGGCCTTAGG
GAACTGGAGGGCACTTCTGACCCACTGCTCTCACTCTTTGGCTCTACTTCTGACAATGACTTGCTCCAAG
CTGCCACTGCCATGGACTCTCTGACGGATTTGGACTTGGAGCAGTTGCTCAGTGAGTCTCCAGAAGGAAG
CCCTTTCCGAGATATGGATGATGGAAGTGATTCCCTTGGGGTGGGATTGGATCAGGAATTCAGGCAGCCC
TCTTCCTTCCCCGAAGGCCTGCCGATACCCCTGGAGAAGCGTGTTAAGGAGCTGGCTCAGGCTGCCAGAG
CTGCTGAGGGAGAGAGCAAACAGAAATTCTTCACTCAAGATATTAATGGCATCCTGCTGGACATAGAGGT
GCAAACTCGGGAGCTGACTAGCCAAATCCGTTCTGGGGTGTTTGCCTATCTGGCTTCATTCCTGCCCTGC
AGCAAGGATGCTCTAGTCAAGCGTGCTCGGAAACTTCACCTCTACGAACAGGGTGGGCGCCTGAAAGAGC
CACTCCAGAAGCTCAAGGATGCCATAGGTAGGGCTATGCCTGAGCAGGTAGCCAAGTACCAGGATGAATG
CCAAGCACACACACAGGCAAAGGTTGCTAAGATGCTGGAGGAAGAGAAAGACAAGGAGCAGAGAGAACGG
ATTTGTTCTGATGAAGAAGAGGATGAAGAAAAGGGGGGCCGGAGAATAATGGGGCCCCGGAAGAAATTCC
AGTGGAATGATGAAATCAGGGAGCTTCTGTGCCAGGTGGTGAAGATCAAGCTGGAGAGCCGTGATCTGGA
GAGGAACAGCAAGGCCCAGGCCTGGGAGGACTGTGTGAAAGCTTTTCTGGATGCTGAGGTCAAGCCTCTC
TGGCCCAAAGGCTGGATGCAAGCCAGGACTCTATTTAAGGAGAGCCGACGAGGCCATGGACACCTGACAT
CACTTCTGGCCAAGAAGAAAGTAATAGCTCCCTCAAAAATCAAGATGAAGGAATCATCTGTTAAGCTTGA
CAAAAAAGTTTCTGTTCCATCAGGACAGCATGGTGGTCCCACTACTTTGCTCTCAGAACATCAGGGCGGA
GGCCTGAACACTGGGGCAAACAGCAGGGAGCATCCATCCCAGGCAACTTGTGGCCTCACTGACTCTGTTT
CTGTCACCCTGGAGGACTCCCTGGATGAAGACCTCGTCAGGAATCCAGCCTCCTCTGTTGATGCTGTGTC
TAAGGAGCTGGCTACGTTGAACAGCAGAGCAGCCAACAGTTCCGAATTCACACTGCCTACACCCTCCAAA
GCACCAACAGAAAAAGTTGGTGGTGTTTTGTGTACAGAAGAGAAACGGAACTTTGCAAAGCCCAGCTCTT
CTGCACCACCCCCCACAAATGCTCTGCAATCACCTCTCAATTTTCTGGCTGAGCAGGCTCTAGCACTGGG
GCAGTCCTCTCAGGAGAAAAAGCCAGAGGGTTCTGGCTTCAAAGAGCTATCCTGTCAGGGTCCCCTTAGC
AAGGGTGTGCCTGAATTACACCCGTCCAAAGCAAAGCACCACAATTTGCCACGGACGTCTCATGGACCCC
AGGCAGCAGCTCCTGTGCCTGGACCCCAAGTCAAAGTCTTTCATGCAGGCACTCAACAGCAGAAAAGCTT
CACACCCCCATCCCCATTTGTCAACAAGCTGCAAGGCCCAAAGGCCACCTCTCCACAGTGTCATCGGTCC
CTTCTGCAGCTGGTAAAGACAGCAGCCAAAGGCCAGGCATTCCATGCCACTATGCCAGCCTCCTCTGGAA
GTTCACCAGCCTCCAGCAGCAGTGCCCATAAGACGACAGCCTCAAACTCTACCACCATCAGCCATCCAGC
CAAGCTGCACCCCACCAGCTCTGTGGGGCCGTCTTATAAGAATAACCCCTTCGCTGGCTCAGTCTCTAAA
CATGGGGCTTCTTCTAGCAGCCCATCGCCCGGAGGAGGAGCCCAAGTGCAGAGCTCTGTTTCTGGGGCCT
CGCTCCCGGGGGTGCAGTCTCCCTCAGCAGGACAGTCTGCTAGCCGAGCTGCCCCAAGTTCTGCTGTGAA
AAAAACACCTGTTACTCAGAAGCTGACCCTTGTAGCTCCACCTGGAGGTCCAAATGGAGATTCTGGTGGT
GGGACCCAGGGAGTGGCAAAATTACTGACTTCCTCCCTGAAGCCTGCTGCAGTTAGTAGTGTGACATCGT
CTACCTCCTTGCCAAAAGGAACTGGCGGGGCAGTGCTGCTGTCCAACACCTCTTCCTTAAGCCTGCTGTC
TTCATCCTATAAGTCCAACAACCCCAAGCTTCCAGGGGCTATGAACTCAAACTCACTGGGAATCATAACC
CAATTTCCACTTCATGTACTCTCCTTCAATGCAGACTCCTCTGCCAAAGCAGGAGTCTCTAAGGATGCCA
TTGTCACAGGTCCAGCCCCTGGGACCTTCCACCATGGCCTCAGCCACAATGCTTCACAGCTTCATGGTAA
AGGGCCTGTTGTACCGAGGAAATTGTGA

Translation (1105 aa):
MSEPHRVQFTSVPGSLNPAFLKKSRKEEVGGTEQHQDCEPAAAAVRITLTLFEPDHKRCPEFFYPELVKN
IRGKVKGLHPGDKKKDVLDPFNDEEKERHKVEALARKFEEKYGGKKRRKDRIQDLIDMGYGYDESDSFID
NSEAYDELVPASLTTKYGGFYINSGTLQFRQASESEDDFIKEKKKKSPKKRKLKEGGEKIKKKKKDDTYD
KEKKSKKSKFSKAGFTALNASKEKKKKKYSGSLSVREMLKKFQKEKEAQKKREEEHKPVAVSSIEAQGLR
ELEGTSDPLLSLFGSTSDNDLLQAATAMDSLTDLDLEQLLSESPEGSPFRDMDDGSDSLGVGLDQEFRQP
SSFPEGLPIPLEKRVKELAQAARAAEGESKQKFFTQDINGILLDIEVQTRELTSQIRSGVFAYLASFLPC
SKDALVKRARKLHLYEQGGRLKEPLQKLKDAIGRAMPEQVAKYQDECQAHTQAKVAKMLEEEKDKEQRER
ICSDEEEDEEKGGRRIMGPRKKFQWNDEIRELLCQVVKIKLESRDLERNSKAQAWEDCVKAFLDAEVKPL
WPKGWMQARTLFKESRRGHGHLTSLLAKKKVIAPSKIKMKESSVKLDKKVSVPSGQHGGPTTLLSEHQGG
GLNTGANSREHPSQATCGLTDSVSVTLEDSLDEDLVRNPASSVDAVSKELATLNSRAANSSEFTLPTPSK
APTEKVGGVLCTEEKRNFAKPSSSAPPPTNALQSPLNFLAEQALALGQSSQEKKPEGSGFKELSCQGPLS
KGVPELHPSKAKHHNLPRTSHGPQAAAPVPGPQVKVFHAGTQQQKSFTPPSPFVNKLQGPKATSPQCHRS
LLQLVKTAAKGQAFHATMPASSGSSPASSSSAHKTTASNSTTISHPAKLHPTSSVGPSYKNNPFAGSVSK
HGASSSSPSPGGGAQVQSSVSGASLPGVQSPSAGQSASRAAPSSAVKKTPVTQKLTLVAPPGGPNGDSGG
GTQGVAKLLTSSLKPAAVSSVTSSTSLPKGTGGAVLLSNTSSLSLLSSSYKSNNPKLPGAMNSNSLGIIT
QFPLHVLSFNADSSAKAGVSKDAIVTGPAPGTFHHGLSHNASQLHGKGPVVPRKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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