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Report for CCDS8883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8883.1 Public Homo sapiens 12 LACRT 24 110 108 CCDS HistoryNCBI Gene:90070Re-query CCDS DB by CCDS ID:8883.1Re-query CCDS DB by GeneID:90070See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8883.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257867.5 ENSP00000257867.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000257867.5Link to Ensembl Protein Viewer:ENSP00000257867.4Re-query CCDS DB by Nucleotide ID:ENST00000257867Re-query CCDS DB by Protein ID:ENSP00000257867
Original member Current member NCBI NM_033277.2 NP_150593.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033277.2Link to Protein Sequence:NP_150593.1Re-query CCDS DB by Nucleotide ID:NM_033277Re-query CCDS DB by Protein ID:NP_150593Link to BLAST:NP_150593.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_150593.1 138 Q9GZZ8 138 100% 0 0

Chromosomal Locations for CCDS 8883.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 54630892 54630953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54631738 54631839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54632241 54632381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54633180 54633233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54634784 54634841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (417 nt):
ATGAAATTTACCACTCTCCTCTTCTTGGCAGCTGTAGCAGGGGCCCTGGTCTATGCTGAAGATGCCTCCT
CTGACTCGACGGGTGCTGATCCTGCCCAGGAAGCTGGGACCTCTAAGCCTAATGAAGAGATCTCAGGTCC
AGCAGAACCAGCTTCACCCCCAGAGACAACCACAACAGCCCAGGAGACTTCGGCGGCAGCAGTTCAGGGG
ACAGCCAAGGTCACCTCAAGCAGGCAGGAACTAAACCCCCTGAAATCCATAGTGGAGAAAAGTATCTTAC
TAACAGAACAAGCCCTTGCAAAAGCAGGAAAAGGAATGCACGGAGGCGTGCCAGGTGGAAAACAATTCAT
CGAAAATGGAAGTGAATTTGCACAAAAATTACTGAAGAAATTCAGTCTATTAAAACCATGGGCATGA

Translation (138 aa):
MKFTTLLFLAAVAGALVYAEDASSDSTGADPAQEAGTSKPNEEISGPAEPASPPETTTTAQETSAAAVQG
TAKVTSSRQELNPLKSIVEKSILLTEQALAKAGKGMHGGVPGGKQFIENGSEFAQKLLKKFSLLKPWA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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