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Report for CCDS88806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88806.1 Public Mus musculus 15 Dmc1 23 108 98 CCDS HistoryNCBI Gene:13404Re-query CCDS DB by CCDS ID:88806.1Re-query CCDS DB by GeneID:13404See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88806.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000229408.1 ENSMUSP00000155228.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229408.1Link to Ensembl Protein Viewer:ENSMUSP00000155228.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229408Re-query CCDS DB by Protein ID:ENSMUSP00000155228
Original member Current member NCBI NM_001278226.1 NP_001265155.1 Accepted alive Link to Nucleotide Sequence:NM_001278226.1Link to Protein Sequence:NP_001265155.1Re-query CCDS DB by Nucleotide ID:NM_001278226Re-query CCDS DB by Protein ID:NP_001265155Link to BLAST:NP_001265155.1

Chromosomal Locations for CCDS 88806.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79562513 79562582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79568639 79568755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79584319 79584379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79584862 79584976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79585098 79585171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79591605 79591646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79593135 79593187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79596244 79596326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79600046 79600192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79601517 79601561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79602401 79602451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGAAGGAGGATCAAGTTGTGCAGGAAGAATCGGGATTCCAAGATGATGAGGAATCTCTGTTTCAAGACA
TTGACCTGTTGCAGAAGCATGGGATTAACATGGCTGATATTAAGAAACTGAAGTCTGTAGGAATCTGTAC
CATTAAAGGGATACAAATGACAACAAGAAGAGCCCTCTGCAATGTCAAAGGCCTCTCAGAAGCCAAAGTG
GAAAAGATTAAAGAGGCAGCCAACAAGCTTATTGAACCAGGATTCCTAACTGCATTTCAGTACAGTGAAA
GGAGGAAGATGGTATTCCATATCACTACTGGGAGCCAGGAATTTGATAAATTACTAGGAGGTGGCATTGA
AAGTATGGCAATTACAGAAGCTTTTGGAGAATTTCGTACTGGAAAAACTCAGCTGTCTCATACCCTCTGT
GGTGAGCATCAGATGGAGCTACTTGATTATGTCGCAGCCAAGTTTCATGAGGAAGCTGGCATTTTCAAAC
TATTGATCATTGACTCAATAATGGCACTTTTTCGAGTGGATTTCAGTGGCCGTGGGGAATTGGCTGAACG
CCAGCAAAAATTGGCCCAGATGTTGTCACGACTCCAAAAAATCTCAGAAGAATATAATGTTGCTGTTTTT
GTGACCAATCAAATGACTGCAGATCCAGGAGCAACTATGACCTTTCAGGCTGATCCCAAAAAACCCATTG
GTGGACACATTCTGGCTCACGCTTCCACAACAAGAATAAGCTTGCGCAAGGGAAGAGGAGAACTGAGGAT
CGCCAAGATTTATGACAGCCCCGAGATGCCTGAAAATGAAGCCACCTTCGCAATAACCGCTGGAGGGATC
GGGGATGCCAAGGAGTAG

Translation (285 aa):
MKEDQVVQEESGFQDDEESLFQDIDLLQKHGINMADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKV
EKIKEAANKLIEPGFLTAFQYSERRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLC
GEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVF
VTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI
GDAKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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