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Report for CCDS88722.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88722.1 Public Mus musculus 14 Elf1 23 108 98 CCDS HistoryNCBI Gene:13709Re-query CCDS DB by CCDS ID:88722.1Re-query CCDS DB by GeneID:13709See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88722.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000227192.1 ENSMUSP00000153956.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227192.1Link to Ensembl Protein Viewer:ENSMUSP00000153956.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227192Re-query CCDS DB by Protein ID:ENSMUSP00000153956
Original member NCBI NM_001286412.1 NP_001273341.1 Updated not alive Link to Nucleotide Sequence:NM_001286412.1Link to Protein Sequence:NP_001273341.1Re-query CCDS DB by Nucleotide ID:NM_001286412Re-query CCDS DB by Protein ID:NP_001273341
Current member NCBI NM_001286412.2 NP_001273341.1 Accepted alive Link to Nucleotide Sequence:NM_001286412.2Link to Protein Sequence:NP_001273341.1Re-query CCDS DB by Nucleotide ID:NM_001286412Re-query CCDS DB by Protein ID:NP_001273341Link to BLAST:NP_001273341.1

Chromosomal Locations for CCDS 88722.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 79536351 79536422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79560747 79560927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79567150 79567314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79569221 79569304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79570723 79570915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79573172 79573618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79580185 79580770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGGCTGCTGTTGTCCAACAGAACGACCTAGTGTTTGAATTTGCAAGTAACGGCATGGAGGACGAGCAGC
AGCTTGGTGATCCTGCTATATTTCCTGCTGTTATTGTGGAACATGTTCCTGGTGCTGATATTCTCAATAG
TTATGCTGGTCTAGCTTGTGTGGAAGAGCCTAATGACATGATTACTGAGAGCTCATTGGATGTTGCTGAA
GAAGAAATCATAGACGATGACGATGACGACATCACCCTTACAGATAATAATATATTTAGCTCCTCTGAAG
ATGACATCGTTGCCCCAATCACCCATGTGTCCGTCACATTAGATGGGATTCCTGAAGTGATGGAAACTCA
GCAAGTGCAAGAGACAAATGCAGACTCCCCAGGAGCCTCCTCCCCAGAGCAGCGCAAGAGAAAGAAAGGA
AGGAAAACAAAACCACCACGGCCAGATTCCCCGACGACTACACCAAATATCTCTGTGAAAAAGAAAAATA
AAGATGGGAAGGGAAACACAATTTACCTTTGGGAGTTTTTGCTGGCCCTGCTTCAGGACAAAGCTACCTG
TCCTAAGTACATCAAGTGGACGCAGCGAGAAAAGGGCATTTTTAAGCTGGTTGATTCTAAAGCCGTGTCT
AGATTGTGGGGGAAGCACAAAAACAAACCTGACATGAACTACGAGACCATGGGGAGAGCACTCAGGTACT
ATTACCAAAGAGGTATTCTTGCAAAAGTGGAAGGTCAGCGCTTGGTGTATCAGTTTAAAGAAATGCCAAA
AGATCTTATCTACATAGATGATGAGGATCCAAGTTCCAGCATAGAGTCTTCGGATCAGTCCTTATCGTCA
ACAACCGCATCAAGTCGGAATCAAGCAAACCGATCAAGAGTATCTTCAAGTCCAGGAATTAAAGGAGGGG
CCGCTACAATTCTAAAGCCCGGGAATTCTAAAGCTGCAAACCCCAAAGATCCGGTGGAAGTTGGACAACC
TTCAGAAGTTCTGAGGACAGTGCAACCCTCACAGGCTCCCTATCCTACCCAGCTCTTCCGAACTGTTCAT
GTAGTACAGCCAGTACAAGCTGTCCCAGAGGAAGCAACCATAGCCAGCACCATGCAGGAGGAAGCAGCAA
ATTCTTCAGTTCCAAGTATTAGGACTATACAGGCTTCAACCCAGGTTCCAGTAGTGGTGTCTCCTGGCAA
CCAACAGTTACATACAGTAACAGTGCCACTCACAACGGTTATAGCCAGCATAGACCCATCATCAGGTGCT
GGGTCTCAGAAATTCATTTTACAAACCATTCCATCGTCACAGCCCATGACAGTACTGAAAGAAAATGTCA
TGCTACAGTCACAGAAGCCAGGCTCTCCTTCAATTGTCCTCAGCCCCACCCAAGTACAGCAGGTCCTCAC
AAGCAATGTTCAGTCCATTTGCAATGGAGCGGGCAGTGTGGCATCCGCACCATCGTTCAGCGCGACGACA
CCTGTGGTGACTTTCTCTCGGAGTTCACAGCTGGTCGCACACCCACCGGGCACTGTGATCACTTCTGTTA
TCAAAGCTCAGGAAACAAAAACTCTTAAGCAAGAGGTGGAGAAAAAGGCCGAAGATGATTTGAATGAAGA
TGCTGAGAAAAGTGCCCAGCAGCCCCAGCCTTATGTGATGGTGTTATCCAGTTCAAACGGGTTTTCCTCT
CAGGTAGCCGTCAAACAGAATGAACTGCTAGAGCCCAACTCTTTTTAA

Translation (575 aa):
MAAVVQQNDLVFEFASNGMEDEQQLGDPAIFPAVIVEHVPGADILNSYAGLACVEEPNDMITESSLDVAE
EEIIDDDDDDITLTDNNIFSSSEDDIVAPITHVSVTLDGIPEVMETQQVQETNADSPGASSPEQRKRKKG
RKTKPPRPDSPTTTPNISVKKKNKDGKGNTIYLWEFLLALLQDKATCPKYIKWTQREKGIFKLVDSKAVS
RLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKEMPKDLIYIDDEDPSSSIESSDQSLSS
TTASSRNQANRSRVSSSPGIKGGAATILKPGNSKAANPKDPVEVGQPSEVLRTVQPSQAPYPTQLFRTVH
VVQPVQAVPEEATIASTMQEEAANSSVPSIRTIQASTQVPVVVSPGNQQLHTVTVPLTTVIASIDPSSGA
GSQKFILQTIPSSQPMTVLKENVMLQSQKPGSPSIVLSPTQVQQVLTSNVQSICNGAGSVASAPSFSATT
PVVTFSRSSQLVAHPPGTVITSVIKAQETKTLKQEVEKKAEDDLNEDAEKSAQQPQPYVMVLSSSNGFSS
QVAVKQNELLEPNSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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