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Report for CCDS88693.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88693.1 Public Mus musculus 14 Ephx2 23 108 98 CCDS HistoryNCBI Gene:13850Re-query CCDS DB by CCDS ID:88693.1Re-query CCDS DB by GeneID:13850See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88693.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000225309.1 ENSMUSP00000152894.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225309.1Link to Ensembl Protein Viewer:ENSMUSP00000152894.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225309Re-query CCDS DB by Protein ID:ENSMUSP00000152894
Original member Current member NCBI NM_001271421.1 NP_001258350.1 Accepted alive Link to Nucleotide Sequence:NM_001271421.1Link to Protein Sequence:NP_001258350.1Re-query CCDS DB by Nucleotide ID:NM_001271421Re-query CCDS DB by Protein ID:NP_001258350Link to BLAST:NP_001258350.1

Chromosomal Locations for CCDS 88693.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 66084682 66084760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66084931 66084989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66085296 66085376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66086234 66086303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66086965 66087067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66088300 66088333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66089506 66089580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66092799 66092910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66094738 66094823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66095686 66095712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66098804 66098838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66101593 66101671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66102147 66102242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66103726 66103794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66107214 66107336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66107977 66108167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66110116 66110263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGGATGAAAGCTACAGGAAGTCCTCCAAAGCCTGTGGAGCCAATCTACCTGAGAATTTCTCCATAAGTC
AAATATTCAGCCAAGCTATGGCAGCAAGAAGCATCAACCGCCCCATGCTTCAGGCAGCCATTGCTCTCAA
AAAGAAAGGATTCACAACATGCATTGTCACCAACAACTGGCTGGACGACGGAGACAAGAGAGACAGCCTG
GCCCAGATGATGTGTGAGCTGAGCCAACACTTTGACTTCCTGATAGAGTCCTGTCAGGTTGGGATGATCA
AGCCTGAGCCTCAGATCTACAATTTTTTACTGGATACCCTGAAGGCAAAACCCAATGAGGTTGTTTTCCT
AGATGACTTTGGAAGTAATCTGAAGCCAGCCCGTGACATGGGGATGGTTACCATCCTGGTCCACAACACA
GCCTCCGCTCTGAGAGAACTGGAGAAGGTCACAGGGACACAGTTTCCTGAGGCCCCACTGCCAGTCCCAT
GCAATCCAAATGACGTCAGCCATGGATATGTGACAGTGAAGCCAGGGATCCGCCTGCATTTTGTGGAGAT
GGGCTCTGGCCCTGCCCTATGCCTTTGCCATGGGTTTCCTGAGAGCTGGTTTTCTTGGAGGTACCAGATC
CCTGCTCTGGCCCAGGCAGGCTTTCGTGTTCTGGCTATAGACATGAAAGGCTATGGAGACTCATCTTCTC
CTCCTGAAATAGAAGAATATGCCATGGAATTGCTGTGTAAGGAGATGGTGACATTCCTGGATAAGCTGGG
AATCCCTCAAGCAGTGTTCATTGGCCATGACTGGGCTGGTGTGATGGTGTGGAACATGGCTCTCTTCTAC
CCTGAGAGAGTGAGGGCTGTGGCCAGTTTGAACACGCCGTTTATGCCACCAGATCCTGATGTGTCTCCCA
TGAAAGTTATCCGATCTATCCCAGTTTTCAATTATCAGCTGTACTTTCAAGAACCAGGAGTGGCCGAGGC
TGAACTGGAGAAGAACATGAGTCGGACTTTCAAAAGCTTCTTCCGAGCCAGTGATGAGACAGGTTTCATC
GCTGTGCATAAAGCCACTGAAATAGGGGGAATCCTTGTGAATACTCCAGAAGATCCCAACCTCAGCAAAA
TTACTACTGAGGAAGAAATAGAGTTTTACATACAGCAGTTCAAGAAGACTGGCTTCAGAGGTCCTCTGAA
CTGGTACCGGAACACAGAAAGAAACTGGAAGTGGAGCTGTAAAGGGTTGGGACGAAAGATCTTGGTCCCA
GCCCTGATGGTCACAGCTGAGAAGGACATTGTACTCCGTCCTGAAATGTCCAAGAACATGGAAAAGTGGA
TCCCTTTCCTGAAAAGGGGACACATTGAAGACTGTGGTCACTGGACACAGATAGAGAAACCAACTGAGGT
GAACCAGATTCTCATCAAGTGGCTGCAGACTGAAGTCCAGAACCCATCAGTGACCTCCAAGATTTAG

Translation (488 aa):
MDESYRKSSKACGANLPENFSISQIFSQAMAARSINRPMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSL
AQMMCELSQHFDFLIESCQVGMIKPEPQIYNFLLDTLKAKPNEVVFLDDFGSNLKPARDMGMVTILVHNT
ASALRELEKVTGTQFPEAPLPVPCNPNDVSHGYVTVKPGIRLHFVEMGSGPALCLCHGFPESWFSWRYQI
PALAQAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFY
PERVRAVASLNTPFMPPDPDVSPMKVIRSIPVFNYQLYFQEPGVAEAELEKNMSRTFKSFFRASDETGFI
AVHKATEIGGILVNTPEDPNLSKITTEEEIEFYIQQFKKTGFRGPLNWYRNTERNWKWSCKGLGRKILVP
ALMVTAEKDIVLRPEMSKNMEKWIPFLKRGHIEDCGHWTQIEKPTEVNQILIKWLQTEVQNPSVTSKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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