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Report for CCDS88691.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88691.1 Public Mus musculus 14 Elp3 23 108 98 CCDS HistoryNCBI Gene:74195Re-query CCDS DB by CCDS ID:88691.1Re-query CCDS DB by GeneID:74195See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88691.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000225355.1 ENSMUSP00000153462.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225355.1Link to Ensembl Protein Viewer:ENSMUSP00000153462.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225355Re-query CCDS DB by Protein ID:ENSMUSP00000153462
Original member Current member NCBI NM_028811.3 NP_083087.1 Accepted alive Link to Nucleotide Sequence:NM_028811.3Link to Protein Sequence:NP_083087.1Re-query CCDS DB by Nucleotide ID:NM_028811Re-query CCDS DB by Protein ID:NP_083087Link to BLAST:NP_083087.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083087.1 547 Q9CZX0-1 547 100% 0 0

Chromosomal Locations for CCDS 88691.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 65531524 65531600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65547134 65547215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65547866 65548093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65549420 65549485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65551385 65551475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65560121 65560314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65563252 65563378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65565312 65565473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65577925 65578079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65580748 65580816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65582115 65582178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65582890 65582960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65586258 65586396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65590506 65590605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65592982 65593000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1644 nt):
ATGAGGCAAAAGAGGAAAGGGGACCTCAGCCCGGCTGAGCTGATGATGCTGACTATAGGAGACGTTATCA
AGCAGCTGGTTGAAGCTCATGAGCAGGGGAAAGACGTCGATCTAAATAAGATGAAAACCAAGACAGCTGC
CAAGTATGGCCTTGCGTCCCAGCCCCGCCTGGTGGATATCATCGCTGCAGTCCCTCCTCACTATCGAAAG
ATCTTGATTCCTAAGCTAAAGGCGAAGCCCGTCAGGACTGCCAGTGGGATCGCTGTTGTGGCTGTGATGT
GCAAACCCCACAGATGTCCACACATCAGTTTCACAGGGAATATATGTATATACTGCCCCGGAGGACCTGA
CTCCGATTTTGAGTATTCAACCCAGTCTTACACGGGCTATGAGCCAACTTCCATGAGAGCTATCCGTGCT
AGATATGACCCTTTTCTGCAGACAAGACACCGGATAGAGCAGCTAAAGCAGCTTGGTCACAGTGTGGATA
AGGTGGAGTTCATCGTGATGGGTGGAACGTTCATGGCCCTTCCAGAAGAGTACAGAGATTATTTCATCCG
AAGTTTACACGATGCTTTATCAGGCCATACTTCAAACAATATTCACGAGGCAATCAAGTATTCTGAGAGA
AGCTTCACAAAGTGTGTTGGAATTACAATTGAGACCAGACCTGATTATTGCATGAAGCGGCACCTAAGTG
ACATGTTGACTTATGGCTGCACAAGGCTGGAGATCGGAGTGCAGAGTGTCTATGAAGATGTGGCCAGAGA
TACCAACAGGGGCCATACTGTGAAGGCAGCGTGTGAATCTTTCCACCTGGCCAAAGATTCTGGTTTCAAA
GTGGTGACGCATATGATGCCTGACCTGCCGAACGTGGGACTGGAGAGAGACATTGAGCAGTTTATAGAAT
TTTTCGAGAACCCTGCTTTTCGTCCTGATGGTTTGAAGCTCTACCCAACCCTGGTTATCCGTGGAACTGG
TCTGTATGAGCTGTGGAAATCAGGAAGGTACAGGAGCTATTCTCCCAGTGACCTGATTGAGCTGGTGGCT
CGGATCCTAGCCCTTGTGCCCCCGTGGACTCGTGTGTACCGGGTGCAGAGAGACATCCCAATGCCCCTTG
TCAGCTCAGGAGTGGAGCATGGCAACCTGCGCGAGCTGGCATTTGCAAGAATGAAGGATCTTGGAATACA
GTGCCGTGATGTGAGAACCAGGGAGGTTGGAATCCAAGAAATTCATCACAGAGTGCGGCCATACCAGGTC
GAGTTGGTACGGAGAGATTATGTTGCCAATGGTGGCTGGGAAACTTTCCTGTCCTACGAAGATCCTGATC
AGGACATTCTGATTGGCCTCCTAAGGCTGCGGAAGTGCTCTGAGGAAACCTTCCGGTTTGAACTGGGTGG
AGGTGTTTCCATAGTCCGAGAGCTACACGTGTATGGAAGTGTGGTCCCTGTGAGCAGCCGGGATCCCACT
AAATTTCAGCATCAGGGGTTCGGCATGCTGCTGATGGAAGAGGCAGAGAGAATCGCTCGGGAAGAGCATG
GATCTGGGAAAATGGCAGTTATATCAGGGGTCGGCACAAGAAATTATTACCGAAAGATTGGCTACAGATT
ACAAGGCCCCTACATGGTAAAGATGCTAAAATAA

Translation (547 aa):
MRQKRKGDLSPAELMMLTIGDVIKQLVEAHEQGKDVDLNKMKTKTAAKYGLASQPRLVDIIAAVPPHYRK
ILIPKLKAKPVRTASGIAVVAVMCKPHRCPHISFTGNICIYCPGGPDSDFEYSTQSYTGYEPTSMRAIRA
RYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEEYRDYFIRSLHDALSGHTSNNIHEAIKYSER
SFTKCVGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAACESFHLAKDSGFK
VVTHMMPDLPNVGLERDIEQFIEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYRSYSPSDLIELVA
RILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELAFARMKDLGIQCRDVRTREVGIQEIHHRVRPYQV
ELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGSVVPVSSRDPT
KFQHQGFGMLLMEEAERIAREEHGSGKMAVISGVGTRNYYRKIGYRLQGPYMVKMLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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