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Report for CCDS88654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88654.1 Public Mus musculus 14 Vmn2r88 23 108 98 CCDS HistoryNCBI Gene:669149Re-query CCDS DB by CCDS ID:88654.1Re-query CCDS DB by GeneID:669149See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88654.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159674.3 ENSMUSP00000125126.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159674.3Link to Ensembl Protein Viewer:ENSMUSP00000125126.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000159674Re-query CCDS DB by Protein ID:ENSMUSP00000125126
Original member Current member EBI ENSMUST00000233848.1 ENSMUSP00000156397.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233848.1Link to Ensembl Protein Viewer:ENSMUSP00000156397.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233848Re-query CCDS DB by Protein ID:ENSMUSP00000156397
Original member Current member NCBI NM_001368932.1 NP_001355861.1 Accepted alive Link to Nucleotide Sequence:NM_001368932.1Link to Protein Sequence:NP_001355861.1Re-query CCDS DB by Nucleotide ID:NM_001368932Re-query CCDS DB by Protein ID:NP_001355861Link to BLAST:NP_001355861.1

Chromosomal Locations for CCDS 88654.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 51411001 51411206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51413038 51413320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51413720 51414523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51415339 51415563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51416705 51416828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51417978 51418882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2547 nt):
ATGAAGCAGCTCTGTGCTTTCACTATTTCATTTTTGTTTCTGAAGTTTTCTCTCATCTTGTGCTGTTTGA
CTGAAGCAAGTTGCTTTTGGAGGATAAAGAATAGTGAAGATAATGATGGAGATTTGCAAAGGGAATGTCA
TTTTTACCTTGGGGCAGTTGATAAACCAATTGAAGATAATTTTTATAATTCACTTTTAAAGTTTAGAATT
GCAGCAAGTGAATATGAGTTTCTTCTGGTAATGTTTTTTGCTACTGATGAGATCAACAAGAATCCTTATC
TTTTACCCAACATAACTTTGATGTTCTCCATCATTGGTGGAAACTGTCATGATTTATTGAGAGGTTTGGA
TCAAGCATATACACAAATAAATGGACATATGAATTTTGTTAATTATTTCTGTTATTTAGATGATTCATGT
GCCATAGGTCTTACAGGACCATCATGGAAAACATCCTTAAAACTGGCAATGCATTCTTCAATGCCACTGG
TTTTCTTTGGATCATTTAATCCTAACCTACATGACCATGACCGGCTGCACCATGTCCATCAAGTAGCCAC
CAAGGACACACATTTGTCCCATGGCATTGTCTCCTTGATGTTTCATTTTAGATGGACTTGGATAGGACTG
GTCATCTCAGATGATGACAAGGGTATTCAGTTTCTCTCAGATTTAAGAGAAGAAAGCCAAAGGCATGGGA
TCTGTTTAGCTTTTGTTAATATGATCCCAGAAAACATGCAGATATACATGACAAGGGCTACAATATATGA
TAAACAAATTATGACGTCTTTAGCAAAAGTTGTTATCATTTATGGTGAAATGAACTCTACACTAGAAGTA
AGCTTTAGAAGATGGGAAAATTTAGGTGCTCGGAGAATCTGGATCACAACCTCACAATGGGATGTCATCA
CAAATAAAAAAGAATTCACCCTTAATCTCTTCCATGGGACTATTACTTTTGCACACCGCAGATTTGAGAT
TCCTAAATTTAAAAAATTTATGCAAACAATGAACACTGCCAAATACCCAGTAGATATTTCTCATACTATA
TTGGAGTGGAATTATTTTAATTGTTCAATCTCTAAGAACAGCAGTAAAATGGATCATATTACATTCAACA
ACACATTGGAATGGACAGCACTGCACAACTATGATATGGTGATGAGTGATGAAGGTTACAATTTGTATAA
TGCTGTTTATGCTGTGGCCCACACCTACCATGAACATATTTTTCAACAAGTAGAGTCTCAGAAAAAGGCA
AAACCCAAAAGATTTTTCACTGTTTGTCAGCAGGTGTCTTCCTTGATGAAAACCAGGGTATTTACTAACC
CTGTTGGAGAACTGGTGAACATGAAGCATAGGGAAAATCAGTGTACAGAGTATGACATTTTCCTCATTTG
GAACTTTCCACAAGGCCTTGGATTAAAAGTGAAAATAGGAAGCTATTTACCTTGTTTTCCACAGAGACAA
GAACTTCATATATCTGATGATTTGGAATGGGCCATGGGAGGAACATCAGTTCCCTCCTCTGTGTGTAGTG
TGGCATGTACTGCAGGATTCAGGAAAATTCATCAGAAAGAAACAGCAGACTGCTGCTTTGATTGTGTTCA
GTGCCCAGAAAATGAGGTTTCCAATGAAACAGATATGGAACAGTGTGTGAAGTGTCCATATGATAAGTAT
GCCAACATAGAGAAAACCCACTGCCTCTCAAGAGCTGTATCATTTCTGGCTTATGAAGATCCATTGGGGA
TAGCTCTAGGCTGCATAGCACTGTCCTTCTCAGCCATCACAATTCTAGTACTAATCACATTTTTGAAGTA
CAAGGATACTCCCATTGTGAAGGCCAATAACCGCATTCTCAGCTACATCCTGCTCATCTCTCTAGTCTTC
TGCTTTCTCTGCTCCCTGCTCTTCATTGGACATCCAAACCAGGTCTCCTGCGTCTTGCAGCAGACCACAT
TTGGAGTATTTTTCACTGTGTCTGTTTCTACAGTGTTGGCCAAAACAATAACTGTGGTCATGGCTTTCAA
GCTCACTACTCCAGGAAGAAGAATGAGAGAGATGTTGGTAACAGGGGCACCTAAGTTGGTCATTCCCATT
TGTACCCTAATCCAATTTGTTCTCTGTGGAATCTGGTTGATAACATCTCCTCCATTTATTGACAGAGATA
TACAATCTGAGCATGGGAAGATTGTCATTCTTTGCAATAAAGGCTCTGTCATTGCCTTCCATGTTGTCCT
GGGATACTTGGGCTCCTTGGCTCTGGGGAGCTTCACTTTGGCTTTCTTGGCTAGGAACCTTCCTGACACA
TTCAATGAAGCCAAATTCCTGACTTTCAGCATGCTGGTGTTCTGCAGTGTCTGGATCACCTTTCTCCCTG
TCTACCATAGCACCAGGGGGAAGGTCATGGTGGTTGTGGAGGTTTTCTCAATCTTGGCTTCTAGTGCAGG
GTTGCTAATGTGTATCTTTGTCCCAAAGTGTTATGTTATTTTAGTTAGACCAGATTCAAATTTTATACGG
AAGTACAAAGATAAATTTCGTTATTGA

Translation (848 aa):
MKQLCAFTISFLFLKFSLILCCLTEASCFWRIKNSEDNDGDLQRECHFYLGAVDKPIEDNFYNSLLKFRI
AASEYEFLLVMFFATDEINKNPYLLPNITLMFSIIGGNCHDLLRGLDQAYTQINGHMNFVNYFCYLDDSC
AIGLTGPSWKTSLKLAMHSSMPLVFFGSFNPNLHDHDRLHHVHQVATKDTHLSHGIVSLMFHFRWTWIGL
VISDDDKGIQFLSDLREESQRHGICLAFVNMIPENMQIYMTRATIYDKQIMTSLAKVVIIYGEMNSTLEV
SFRRWENLGARRIWITTSQWDVITNKKEFTLNLFHGTITFAHRRFEIPKFKKFMQTMNTAKYPVDISHTI
LEWNYFNCSISKNSSKMDHITFNNTLEWTALHNYDMVMSDEGYNLYNAVYAVAHTYHEHIFQQVESQKKA
KPKRFFTVCQQVSSLMKTRVFTNPVGELVNMKHRENQCTEYDIFLIWNFPQGLGLKVKIGSYLPCFPQRQ
ELHISDDLEWAMGGTSVPSSVCSVACTAGFRKIHQKETADCCFDCVQCPENEVSNETDMEQCVKCPYDKY
ANIEKTHCLSRAVSFLAYEDPLGIALGCIALSFSAITILVLITFLKYKDTPIVKANNRILSYILLISLVF
CFLCSLLFIGHPNQVSCVLQQTTFGVFFTVSVSTVLAKTITVVMAFKLTTPGRRMREMLVTGAPKLVIPI
CTLIQFVLCGIWLITSPPFIDRDIQSEHGKIVILCNKGSVIAFHVVLGYLGSLALGSFTLAFLARNLPDT
FNEAKFLTFSMLVFCSVWITFLPVYHSTRGKVMVVVEVFSILASSAGLLMCIFVPKCYVILVRPDSNFIR
KYKDKFRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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