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Report for CCDS88517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88517.1 Public Mus musculus 13 Rnf180 23 108 98 CCDS HistoryNCBI Gene:71816Re-query CCDS DB by CCDS ID:88517.1Re-query CCDS DB by GeneID:71816See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000226044.1 ENSMUSP00000153478.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226044.1Link to Ensembl Protein Viewer:ENSMUSP00000153478.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226044Re-query CCDS DB by Protein ID:ENSMUSP00000153478
Original member Current member NCBI NM_001360890.1 NP_001347819.1 Accepted alive Link to Nucleotide Sequence:NM_001360890.1Link to Protein Sequence:NP_001347819.1Re-query CCDS DB by Nucleotide ID:NM_001360890Re-query CCDS DB by Protein ID:NP_001347819Link to BLAST:NP_001347819.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347819.1 591 Q3U827-2 591 100% 0 0

Chromosomal Locations for CCDS 88517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 105131364 105131563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 105167528 105167653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 105181450 105181675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 105246663 105246698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 105249611 105250567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 105252252 105252347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 105270905 105271039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGAAAAGAAGCGAAGAGTCGACAAGTACGCAGAGCCCCGAGGAGCAAACAGGCACCCTTCATTGTTGGA
GATGTAGAAAATGCATTGCAAGTTCTGGTTGCTTCATGACTCCTCTTGAGACTCAAGTGGTTGAGGACAG
ACATGAATCAGTTGATGCTCAAAACACCTGTCACCTGTGGCACATGAATGTAGACGCCCTTCCGGAGTGG
ATCAGCTGCTTGCTGCAGAAGGCCCAGTGGACAGTTGGGAAACTGAATTGTCCTTTCTGTGGGGCCCGAT
TAGGGGGCTTTAATTTTGTCAGCACTCCAAAATGTTCCTGTGGCCAGCTTGCAGCTGTACATCTCTGCAA
GAGCCGGACTGATCACCAAGCAGCACAGGGAGGGAGACTAATGAGACCAGCGCTGAAACATTTGCCACAT
CCCGGAGTCCCGTCAGGTTGTGATAAGGAAACTCTGCTGACAGGTGGTGGCTCCAAAACCAGAAACCACT
GGCTTTTAAGCATGGCCCGAAACAGTAACGGCCTCGGAAGACTTACAGAAGCACTCTGCCTGGAGGTGCG
AGCGACGTATTTTGAGATGAAGAATGAAAAACTGCTCTTCAAAGCCTCGGACCCAAAATGCCAGCCTTTT
GTTCCTCAGCCTGACACCGGCAGGTGTCCTTCAAGAGCGTCTCACAGAAAGTCACACAGTTTGGACCTGA
ACATCAGTGAGAAGCTGATTTTATTACCCACTTTATATGAAATACATCGTAAGCCTACTGCCTATCCCAG
GCTAAATGAAACGGGGCCCATTGACCTTTCAGGCTTGGCTTTACCGTGTAGTAACAGTAGCTGCTCCTTT
CAAAGCCCACCTAGTTTTGATCCGAATATGCTGCTGCACAGACTTTCAGTGGCTCCCCATGAGACCCAGG
CACAAAGGGGAAGAGAATGCCAGTGCGGCCTAGAAGCTTCTTCAGTCTACTCGGATCACGCTAACGCTAA
CAGCCTGCCATTCCTGATGGATCTGCCCTCAGCAGGGAGGAGCGTGCTGGAGGCCTCGGACCAAGAGGAG
CACCTCTCCCAGCTGGACTTCCTGCGCTCTGCCAGCTTCCCCTTGGGCACCATTAACCACAGGCTGAACA
ACAGGGAGAGAAGCAAGTTGAGGACTCTGCGAAGGCAGCAGAGGCGCGAACGATGGCTACAGAAGCAGGG
TAAATACTCAGGAGTGGGCTTGCTGGATCACATGACCGTGAGTAATGAGATGAGTACAGATGAGGAAACG
GAGTTCCCAGAGGAGAAGGACAGCTACATGTGTGCAGTGTGCCTGGATGTGTACTTCAACCCCTACATGT
GCTACCCCTGCCACCACATCTTCTGCGAGCCCTGCCTACGAACTCTGGCCAAAGACAACCCCGCAAGCAC
TCCCTGCCCACTGTGCCGGACAATTATTTCTAGAGTCTTTCTCCAGACAGAACTGAACAATGCCACAAAG
ACATTCTTTACTAAAGAATATTTGAAAATCAAGCAAAGCTTTCAGAAATCCAGCTCTGCGAAGTGGCCCT
TGCCGAGCTGCAGGAAAGGATTCCATCTCTTCGGAGGATTCCACAGGCGCGCCGCCCCAGTGACACGGAG
GCAGTTCCCGCACGGCGCTCACAGGATGGACTACCTGCACTTCGAGGACGACAGCCGTGGATGGTGGTTT
GACATGGATATGGTGATCATCTATATTTATTCAGTGAACTGGGTCATTGGATTCGTTGTTTTCTGCTTTC
TTTGCTATTTTTTCTTTCCGTTTTAG

Translation (591 aa):
MKRSEESTSTQSPEEQTGTLHCWRCRKCIASSGCFMTPLETQVVEDRHESVDAQNTCHLWHMNVDALPEW
ISCLLQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLCKSRTDHQAAQGGRLMRPALKHLPH
PGVPSGCDKETLLTGGGSKTRNHWLLSMARNSNGLGRLTEALCLEVRATYFEMKNEKLLFKASDPKCQPF
VPQPDTGRCPSRASHRKSHSLDLNISEKLILLPTLYEIHRKPTAYPRLNETGPIDLSGLALPCSNSSCSF
QSPPSFDPNMLLHRLSVAPHETQAQRGRECQCGLEASSVYSDHANANSLPFLMDLPSAGRSVLEASDQEE
HLSQLDFLRSASFPLGTINHRLNNRERSKLRTLRRQQRRERWLQKQGKYSGVGLLDHMTVSNEMSTDEET
EFPEEKDSYMCAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPASTPCPLCRTIISRVFLQTELNNATK
TFFTKEYLKIKQSFQKSSSAKWPLPSCRKGFHLFGGFHRRAAPVTRRQFPHGAHRMDYLHFEDDSRGWWF
DMDMVIIYIYSVNWVIGFVVFCFLCYFFFPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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