NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS88516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88516.1 Public Mus musculus 13 Trim23 23 108 98 CCDS HistoryNCBI Gene:81003Re-query CCDS DB by CCDS ID:88516.1Re-query CCDS DB by GeneID:81003See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88516.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069187.11 ENSMUSP00000070767.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069187.11Link to Ensembl Protein Viewer:ENSMUSP00000070767.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000069187Re-query CCDS DB by Protein ID:ENSMUSP00000070767
Original member Current member NCBI NM_001361539.1 NP_001348468.1 Accepted alive Link to Nucleotide Sequence:NM_001361539.1Link to Protein Sequence:NP_001348468.1Re-query CCDS DB by Nucleotide ID:NM_001361539Re-query CCDS DB by Protein ID:NP_001348468Link to BLAST:NP_001348468.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348468.1 513 Q8BGX0-3 513 100% 0 0

Chromosomal Locations for CCDS 88516.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 104178881 104178961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104181074 104181236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104184726 104184847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104187401 104187679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104189663 104189878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104192017 104192151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104197990 104198119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104198594 104198704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104200069 104200193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104201231 104201410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1542 nt):
ATGGCTGCCCTCGCTGTAAACAAGCCCGGAGCCGGAGTAGACAGTGGGCGGCAGGGCAGCCGGGGGACGG
CTGTGGTGAAGGTTCTGGAGTGTGGGGTTTGTGAAGATGTCTTCTCTTTGCAAGGAGATAAAGTTCCTCG
CCTCCTCCTCTGTGGCCACACAGTCTGTCATGACTGTCTTACTCGCTTGCCTCTGCATGGAAGAGCAATA
CGTTGCCCATTTGATCGACAAGTAACAGACCTAGGAGACTCAGGTGTATGGGGTTTGAAAAAGAACTTTG
CTTTACTGGAGCTTTTAGAACGTTTGCAAAATGGGCACATTGGTCAGTATGGAGCTGCAGAAGAGGCCAT
TGGGACATCTGGAGAGAGCATCATTCGCTGTGATGAAGATGAAGCTCACGTTGCATCTGTATATTGCACT
GTGTGTGCAACTCACTTGTGCTCAGACTGTTCTCAAGTTACTCATTCTACAAAGACATTAGCAAAGCATA
GGCGTGTGCCTCTAGCTGATAAACCTCATGAGAAAACCATGTGCTGTCAGCACCAGGTGCATGCCATTGA
GTTTGTTTGCTTGGAAGAAGGTTGTCAAACTAGTCCACTCATGTGCTGTGTCTGCAAAGAATATGGAAAG
CACCAAGGTCACAAGGTCCCAGGTACTGCAGAGAATGCCCGATCATGTGTCAGAGCTTATTTTTCTGATT
TACATGAAACTCTTTGTCGTCAAGAAGAAATGGCTCTAAGTGTTGTTGATGCCCATGTTCGAGAAAAACT
GATTTGGCTTAGGCAGCAACAAGAGGATATGACTATTCTCTTGTCCCAGGTCTCAACAGCCTGTCTCCAC
TGTGAAAAAACTCTGCAGCAGGATGATTGCAGAGTTGTCTTGGCAAAACAAGAAATCACAAGATTACTAG
AAACACTGCAGAAACAGCAGCAGCAGTTTACAGAGGTTGCAGATCATATTCAGTTGGATGCCAGTATTCC
AGTCACTTTTACAAAGGACAATAGAGTTCATATTGGACCCAAAATGGAAATCCGAGTAGTCACATTAGGA
TTAGATGGTGCTGGAAAAACTACCATTTTGTTCAAGTTAAAACAAGATGAATTTATGCAACCTATTCCAA
CAATTGGTTTTAATGTGGAAACTGTGGAATACAAAAATCTAAAATTCACCATTTGGGATGTGGGTGGAAA
ACACAAATTAAGACCATTGTGGAAACATTATTACCTCAATACACAAGCTGTTGTATTTGTTGTTGATAGT
AGTCATAGAGACAGAATTAGTGAAGCACACAGTGAACTTGCAAAGTTGTTAACGGAAAAAGAACTCCGAG
ATGCCTTACTCTTGATTTTTGCTAACAAACAGGATGTAGCTGGAGCACTTTCAGTAGAAGAAATCACTGA
ACTTCTCAGTCTCCATAAACTATGCTGTGGAAGGAGTTGGTATATTCAGGGCTGTGATGCTCGAAGTGGA
ATGGGGCTCTACGAAGGGTTGGACTGGCTGTCCCGGCAACTTGTGGCTGCTGGAGTGTTGGATGTTGCTT
GA

Translation (513 aa):
MAALAVNKPGAGVDSGRQGSRGTAVVKVLECGVCEDVFSLQGDKVPRLLLCGHTVCHDCLTRLPLHGRAI
RCPFDRQVTDLGDSGVWGLKKNFALLELLERLQNGHIGQYGAAEEAIGTSGESIIRCDEDEAHVASVYCT
VCATHLCSDCSQVTHSTKTLAKHRRVPLADKPHEKTMCCQHQVHAIEFVCLEEGCQTSPLMCCVCKEYGK
HQGHKVPGTAENARSCVRAYFSDLHETLCRQEEMALSVVDAHVREKLIWLRQQQEDMTILLSQVSTACLH
CEKTLQQDDCRVVLAKQEITRLLETLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLG
LDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS
SHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSG
MGLYEGLDWLSRQLVAAGVLDVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH