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Report for CCDS88331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88331.1 Public Mus musculus 12 Crppa 23 108 98 CCDS HistoryNCBI Gene:75847Re-query CCDS DB by CCDS ID:88331.1Re-query CCDS DB by GeneID:75847See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88331.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000223205.1 ENSMUSP00000152872.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223205.1Link to Ensembl Protein Viewer:ENSMUSP00000152872.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223205Re-query CCDS DB by Protein ID:ENSMUSP00000152872
Original member Current member NCBI NM_001289502.1 NP_001276431.1 Accepted alive Link to Nucleotide Sequence:NM_001289502.1Link to Protein Sequence:NP_001276431.1Re-query CCDS DB by Nucleotide ID:NM_001289502Re-query CCDS DB by Protein ID:NP_001276431Link to BLAST:NP_001276431.1

Chromosomal Locations for CCDS 88331.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 36381774 36382024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36390346 36390622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36473102 36473206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36476700 36476745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36501978 36502072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36521433 36521522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36521959 36522051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36547829 36547960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36688249 36688353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGGAGCCTGGGCCGTGCAGCAGGCCCGCTGAGCCTGGGCATTGCGTGAGCGGCCCCGCGGGCGCGGGCT
CAGCGTTCCCGGAGTCCCCGTTGTCCGTCGCTGGGGCGGAGCCCGGGAACCGCCCTGGAACCGTGGCCGC
CGTGCTGCCGGCTGGGGGTTGCGGGGAAAGGATGGGCGTCCGCACCCCGAAGCAGTTCTGCCGGGTTCTG
GAAAGGCCGCTCATCAGCTACACTTTGCAGGCTATGGAGAGAGTATGCTGGATAAAGGACATTGTTGTGA
CAGTGACAGGGGAGAACATGGAAGCAATGAGAAGTATCATCCAGAGGTATGGGCATAAGCGCATCTCACT
AGCTGAGGCTGGAGCCACGCGCCACAGATCAATTTTCAATGGACTGAAAGCCCTGGCAGAAGATCAGCCA
GACTGTAAACTCACTAAGCCAGAAGTGGTGATTATCCATGACGCCGTGAGACCTTTTGTTGAGGAAGATA
TCCTCCTGAGAGTTGTCTTAGCAGCTAAGGAACATGGGTGTAGTGATTTTGACTTGGAATTTGGAACAGA
GTGCTTGCAGTTGGCTCTAAAATACTGTCACAGGAAAGCAAAACTTGTAGAAGGGCCCCCTGCCCTCTGG
AAGGTGACCTACAAACAAGACCTGTGTGCAGCTGAAGCCATGATTAAAGAGAAAATTTCACAAGAGATTT
GTGTGGTCATGAACACAAAAGATGAAGAATCTGTAGGACATCTTCTTGAGGAAGCGCTAAGAAAGGAACT
AAATTGTATGAAAATCACATCTACAGTTATGGATCACATAGGCGGAGACATTAGGAACTTCATAGAGCAA
TGTTACAGTTTCATCTGTGTGAATGTTGTGTCCCCTGATAGTCAAGAAACCAGGAAGTTACTGCGTATCC
TCGAAGAGAGCAGCCTTCCTCTTCTGTATCCTGTAGTTGTTGTTTTGGTACACTGCTTTGACTTCACGTC
AGTGCCACTCGCTCAGAAGATGGAAAGCCTGGTGTGGATTAGGGGGTTAGCAAAGGAAGTGAAAGAAAGG
AATATTCTCCTAAGTGGACTCCTCCTAAACTACTCACAGGATGAGCAGAAGCTACAAGAGAGTTTAGGAC
AAAGTGCAGCCATCATAGCTGCCTTAGTTAAGGAAAGAAATTCTGCACTTGTTGGGCAGCTCCTGGTGGC
ATGA

Translation (397 aa):
MEPGPCSRPAEPGHCVSGPAGAGSAFPESPLSVAGAEPGNRPGTVAAVLPAGGCGERMGVRTPKQFCRVL
ERPLISYTLQAMERVCWIKDIVVTVTGENMEAMRSIIQRYGHKRISLAEAGATRHRSIFNGLKALAEDQP
DCKLTKPEVVIIHDAVRPFVEEDILLRVVLAAKEHGCSDFDLEFGTECLQLALKYCHRKAKLVEGPPALW
KVTYKQDLCAAEAMIKEKISQEICVVMNTKDEESVGHLLEEALRKELNCMKITSTVMDHIGGDIRNFIEQ
CYSFICVNVVSPDSQETRKLLRILEESSLPLLYPVVVVLVHCFDFTSVPLAQKMESLVWIRGLAKEVKER
NILLSGLLLNYSQDEQKLQESLGQSAAIIAALVKERNSALVGQLLVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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