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Report for CCDS88261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88261.1 Public Mus musculus 11 Mpp2 23 108 98 CCDS HistoryNCBI Gene:50997Re-query CCDS DB by CCDS ID:88261.1Re-query CCDS DB by GeneID:50997See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88261.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100398.4 ENSMUSP00000097967.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100398.4Link to Ensembl Protein Viewer:ENSMUSP00000097967.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000100398Re-query CCDS DB by Protein ID:ENSMUSP00000097967
Original member NCBI NM_001356324.1 NP_001343253.1 Updated not alive Link to Nucleotide Sequence:NM_001356324.1Link to Protein Sequence:NP_001343253.1Re-query CCDS DB by Nucleotide ID:NM_001356324Re-query CCDS DB by Protein ID:NP_001343253
Current member NCBI NM_001356324.2 NP_001343253.1 Accepted alive Link to Nucleotide Sequence:NM_001356324.2Link to Protein Sequence:NP_001343253.1Re-query CCDS DB by Nucleotide ID:NM_001356324Re-query CCDS DB by Protein ID:NP_001343253Link to BLAST:NP_001343253.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343253.1 569 Q9WV34-2 569 100% 0 0

Chromosomal Locations for CCDS 88261.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102059317 102059493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102060421 102060549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102060767 102060969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102061496 102061657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102061901 102061969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102062055 102062160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102062251 102062382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102063188 102063415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102064294 102064443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102064569 102064721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102080653 102080771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102082329 102082410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGGCCTGCAGCCCAGGCAGTGAGGGTTCCTTGGAGGGGATTTCCCTAGGCTCCTCCGAAGAAGCAGAGC
TCCGCAGGGAAGCTATGCAGCAAGTCTTGGACAACCTGGGATCCCTGCCCAATGCCACTGGGGCCGCGGA
ACTGGACCTGATCTTTCTTCGAGGCATAATGGAAAGTCCGATAGTCAGATCCCTGGCCAAGGCCCACGAG
CGGCTGGAGGAGACGAAGTTGGAGGCCGTCCGGGATAACAACCTGGAGCTGGTGCAGGAAATCCTTCGGG
ACCTGGCAGAGCTGGCAGAGCAGAGCAGCACCGCTGCAGAGCTGGCACGCATCCTCCAGGAGCCCCACTT
CCAGTCCCTCCTGGAGACACATGACTCAGTGGCTTCAAAGACCTATGAGACACCACCCCCAAGCCCAGGC
CTGGATCCCACGTTTAGCAACCAGCCAGTACCTCCTGATGCGGTGCGCATGGTGGGCATTCGGAAGACTG
CAGGAGAACACCTGGGTGTGACATTCCGAGTGGAGGGTGGTGAGCTGGTGATTGCCCGCATTCTGCATGG
GGGCATGGTGGCTCAGCAAGGTCTGCTGCATGTCGGTGACATCATCAAGGAAGTGAATGGACAGCCAGTG
GGCAGCGATCCCCGGGCACTGCAGGAGCTCCTGCGCAGTGCCAGTGGCAGTGTCATCCTCAAGATCTTGC
CCAGCTACCAGGAACCCCACCTGCCCCGACAGGTATTTGTTAAATGCCACTTCGACTATGACCCTGCCCG
GGACAGTCTCAGCCCCTGCAAGGAGGCAGGCCTGCGCTTCAACGCGGGGGACTTGCTCCAGATTGTAAAC
CAAGATGATGCCAACTGGTGGCAGGCATGCCACGTAGAAGGCGGCAGTGCCGGCCTCATCCCCAGCCAGC
TGTTGGAGGAGAAACGGAAAGCATTTGTCAAGCGGGACCTGGAACTGACCCCGACCTCAGGGACCCTATG
CGGCAGCCTTTCAGGAAAGAAAAAGAAGCGAATGATGTATTTGACCACCAAGAATGCAGAGTTTGACCGC
CATGAGCTGCTCATTTATGAGGAGGTGGCCCGCATGCCCCCATTCCGCAGGAAAACCCTGGTACTGATTG
GCGCGCAGGGTGTGGGCCGGCGCAGCCTGAAAAACAAGCTCATTTTGTGGGATCCAGACCGCTACGGCAC
CACGGTGCCCTACACATCACGGAGGCCCAAGGACTCAGAACGGGAGGGGCAGGGCTACAGCTTTGTGTCC
CGTGGGGAGATGGAGGCTGACATCCGAGCCGGGCGCTACCTAGAACATGGCGAGTATGAGGGCAACCTGT
ATGGCACACGGATCGACTCCATCCGGGGCGTTGTTGCCTCTGGCAAGGTGTGCGTGCTGGATGTCAACCC
GCAGGCGGTGAAGGTCCTGAGGACAGCTGAGTTTGTCCCTTACGTGGTGTTCATAGAGGCTCCTGATTAT
GAGACTCTACGGGCCATGAACCGGGCTGCGCTGGAGAGTGGCGTGTCCACTAAGCAGTTGACGGAGGCAG
ATCTGAGGCGGACAGTGGAGGAGAGCAGCCGCATCCAGAGGGGCTATGGGCATTACTTCGACCTCAGCCT
GGTCAACAGCAACCTGGAGAGGACCTTCCGTGAGCTCCAGACTGCCATGGAGAAACTTCGCACGGAGCCC
CAGTGGGTGCCTGTGAGCTGGGTGTACTGA

Translation (569 aa):
MACSPGSEGSLEGISLGSSEEAELRREAMQQVLDNLGSLPNATGAAELDLIFLRGIMESPIVRSLAKAHE
RLEETKLEAVRDNNLELVQEILRDLAELAEQSSTAAELARILQEPHFQSLLETHDSVASKTYETPPPSPG
LDPTFSNQPVPPDAVRMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV
GSDPRALQELLRSASGSVILKILPSYQEPHLPRQVFVKCHFDYDPARDSLSPCKEAGLRFNAGDLLQIVN
QDDANWWQACHVEGGSAGLIPSQLLEEKRKAFVKRDLELTPTSGTLCGSLSGKKKKRMMYLTTKNAEFDR
HELLIYEEVARMPPFRRKTLVLIGAQGVGRRSLKNKLILWDPDRYGTTVPYTSRRPKDSEREGQGYSFVS
RGEMEADIRAGRYLEHGEYEGNLYGTRIDSIRGVVASGKVCVLDVNPQAVKVLRTAEFVPYVVFIEAPDY
ETLRAMNRAALESGVSTKQLTEADLRRTVEESSRIQRGYGHYFDLSLVNSNLERTFRELQTAMEKLRTEP
QWVPVSWVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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