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Report for CCDS88258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88258.1 Public Mus musculus 11 Ptges3l 23 108 98 CCDS HistoryNCBI Gene:73635Re-query CCDS DB by CCDS ID:88258.1Re-query CCDS DB by GeneID:73635See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88258.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107252.8 ENSMUSP00000102873.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107252.8Link to Ensembl Protein Viewer:ENSMUSP00000102873.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107252Re-query CCDS DB by Protein ID:ENSMUSP00000102873
Original member Current member NCBI NM_001357574.1 NP_001344503.1 Accepted alive Link to Nucleotide Sequence:NM_001357574.1Link to Protein Sequence:NP_001344503.1Re-query CCDS DB by Nucleotide ID:NM_001357574Re-query CCDS DB by Protein ID:NP_001344503Link to BLAST:NP_001344503.1

Chromosomal Locations for CCDS 88258.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101419169 101419186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101419675 101419728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101421865 101421954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101423780 101423878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101423977 101424043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101424155 101424268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101424616 101424623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGGAACGGCAGCCTGCCCGGACTCTGTGGTACGACAGACCCAAATATGTTTTCATGGAGTTTTGCGTTG
AGGACAGCACCGACGTCAGTGTGCTCATTGAGGACCACCGCGTCGTGTTCAGCTGCAGGAATGGTGATGG
AGTGGAGCTGTATAACGAGATTGAATTCTATGCCAAGGTGAACTCCAAGGACTCCCAGGATAAGCGTTCT
GGTCGCTCCATTACTTGCTTTGTGAGGAAATGGAAGGAGAAGGTGGCCTGGCCTAGGCTCACAAAGGAGG
ATATAAAGCCTGTGTGGCTCTCTGTGGACTTCGATAACTGGAGAGACTGGGAAGGAGACGATGAGGTGGA
GCTGGCTCAGGTGGAACATTATGCAGAGCTTCTGAACAAGGTCAGCACTAAGAGGCCTCCCCCTGCCATG
GATGATCTGGACGATGATTCTGACAGCTAA

Translation (149 aa):
MERQPARTLWYDRPKYVFMEFCVEDSTDVSVLIEDHRVVFSCRNGDGVELYNEIEFYAKVNSKDSQDKRS
GRSITCFVRKWKEKVAWPRLTKEDIKPVWLSVDFDNWRDWEGDDEVELAQVEHYAELLNKVSTKRPPPAM
DDLDDDSDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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