NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS88249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88249.1 Public Mus musculus 11 Msl1 23 108 98 CCDS HistoryNCBI Gene:74026Re-query CCDS DB by CCDS ID:88249.1Re-query CCDS DB by GeneID:74026See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88249.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107485.7 ENSMUSP00000103109.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107485.7Link to Ensembl Protein Viewer:ENSMUSP00000103109.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107485Re-query CCDS DB by Protein ID:ENSMUSP00000103109
Original member Current member NCBI NM_001361932.1 NP_001348861.1 Accepted alive Link to Nucleotide Sequence:NM_001361932.1Link to Protein Sequence:NP_001348861.1Re-query CCDS DB by Nucleotide ID:NM_001361932Re-query CCDS DB by Protein ID:NP_001348861Link to BLAST:NP_001348861.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348861.1 463 Q6PDM1-4 463 100% 0 0

Chromosomal Locations for CCDS 88249.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98795831 98796604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98799140 98799363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98800000 98800393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGACCATGAGATCCGCAGTGTTCAAGGCGGCCGCGGCCCCTGCCGGCGGCAACCCCGAGCAGCGACTGG
ACTACGAGCGGGCTGCGGCGCTGGGCGGGCCCGAGGACGAGTCCGGGGCGGCCGAAGCCCATTTCCTCCC
CCGGCATCGTAAGCTCAAGGAGCCGGGGCCCCCGCTGGCCTCTTCCCAGGGCGGGAGCCCCTCGCCCTCT
CCAGCCGGCTGCGGCGGCGGCAAGGGCCGGGGCTTGTTACTCCCAGCCGGGGCGGCCCCCGGGCAGCAGG
AAGAGAGCTGGGGCGGTTCGGTGCCCTTGCCCTGTCCGCCCCCAGCTACTAAACAAGCCGGCATCGGCGG
GGAGCCAGTCGCAGCCGGCGCTGGCTGCAGCCCCCGGCCCAAGTATCAGGCGGTGCTGCCCATTCAGACG
GGCTCTATCGTGGTGGCGGCGGCCAAAGAGCCTACGCCCTGGGCTGGGGACAAGGGTGGGGCGGCTCCCC
CAGCTGCCACCGCCTCGGACCCGGCGGGACCCCCACCACTACCTCTGCCCGGGCCACCACCCCTCGCGCC
CACCGCCACTGCTGGGACCCTGGCGGCCAGTGAGGGCAGATGGAAGAGTATAAGGAAGAGCCCTCTCGGG
GGTGGCGGCGGCTCGGGAGCCTCCAGTCAGGCCGCCTGCCTCAAACAGATCCTTCTGCTGCAATTGGACC
TCATCGAACAGCAGCAGCAGCAGTTGCAGGCCAAGGAGAAGGAGATAGAGGAGCTGAAGTCCGAGAGAGA
TACGCTCCTTGCTCGGATTGAACGTATGGAAAGGCGGATGCAGCTGGTGAAGAGGGATAACGAGAAGGAA
AGGCACAAGCTGCTCCAGGGCTATGAACCTGAAGAGAGAGAGGAAGCAGAGTTGTCTGAGAAAATTAAAT
TGGAGCGCCAGCCGGAGCTTTGCGAGACCTCCCAGGCTCTGCCTTCCAAGCCTTTCTCATGTGGCCGGAG
TGGAAAGGGACACAAAAGGAAAACCCCATTTGGAAATACAGAAAGAAAGACTCCTGTTAAAAAGCTGGCT
CCTGAATTTTCAAAAGTCAAAACAAAAACTCCTAAGCACTCTCCCATTAAAGAGGAACCCTGTGGTTCCA
TATCAGAAACTGTTTGTAAACGTGAATTGAGGAGCCAAGAAACCCCAGAAAAGCCCCGGTCTTCAGTGGA
TACCCCACCAAGACTCTCGACTCCCCAAAAGGGACCCAGCACCCACCCCAAGGAGAAAGCCTTCTCAAGT
GAGATGGAAGATTTGCCGTACCTTTCCACCACAGAAATGTATTTGTGTCGTTGGCACCAGCCTCCCCCAT
CACCGTTACCATTACGGGAATCCTCTCCAAAGAAGGAGGAGACTGTAGCAAGTAAGGCATAG

Translation (463 aa):
MTMRSAVFKAAAAPAGGNPEQRLDYERAAALGGPEDESGAAEAHFLPRHRKLKEPGPPLASSQGGSPSPS
PAGCGGGKGRGLLLPAGAAPGQQEESWGGSVPLPCPPPATKQAGIGGEPVAAGAGCSPRPKYQAVLPIQT
GSIVVAAAKEPTPWAGDKGGAAPPAATASDPAGPPPLPLPGPPPLAPTATAGTLAASEGRWKSIRKSPLG
GGGGSGASSQAACLKQILLLQLDLIEQQQQQLQAKEKEIEELKSERDTLLARIERMERRMQLVKRDNEKE
RHKLLQGYEPEEREEAELSEKIKLERQPELCETSQALPSKPFSCGRSGKGHKRKTPFGNTERKTPVKKLA
PEFSKVKTKTPKHSPIKEEPCGSISETVCKRELRSQETPEKPRSSVDTPPRLSTPQKGPSTHPKEKAFSS
EMEDLPYLSTTEMYLCRWHQPPPSPLPLRESSPKKEETVASKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH