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Report for CCDS88215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88215.1 Public Mus musculus 11 Mtmr4 23 108 98 CCDS HistoryNCBI Gene:170749Re-query CCDS DB by CCDS ID:88215.1Re-query CCDS DB by GeneID:170749See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88215.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092802.11 ENSMUSP00000090478.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092802.11Link to Ensembl Protein Viewer:ENSMUSP00000090478.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000092802Re-query CCDS DB by Protein ID:ENSMUSP00000090478
Original member Current member NCBI NM_001357901.1 NP_001344830.1 Accepted alive Link to Nucleotide Sequence:NM_001357901.1Link to Protein Sequence:NP_001344830.1Re-query CCDS DB by Nucleotide ID:NM_001357901Re-query CCDS DB by Protein ID:NP_001344830Link to BLAST:NP_001344830.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344830.1 1133 Q91XS1-2 1133 100% 0 0

Chromosomal Locations for CCDS 88215.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87593431 87593433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87597196 87597285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87597615 87597731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87598863 87598945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87600504 87600664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87600774 87600870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87601059 87601172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87602408 87602604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87602780 87602908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87603388 87603499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87603987 87604182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87604418 87604603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87604996 87605150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87610933 87612316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87613422 87613532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87613772 87613860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87614076 87614253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3402 nt):
ATGGGTGAGGAGGGCCCCCCCAGCCTGGAGTACATCCAAGCCAAGGATCTGTTCCCCCCCAAGGAACTGG
TGAAGGAGGAGGAGAATCTTCAGGTACCCTTCACAGTGCTGCAGGGTGAGGGAGTGGAATTCCTGGGCCG
GGCAACCGATGCCCTCATTGCCATCTCTAACTACCGGCTGCACATCAAGTTCAAAGACTCTGTCATCAAC
GTGCCCCTCCGGATGATTGACAGTGTGGAAAGCCGTGATATGTTTCAGTTGCACATTGCCTGCAAGGACT
CCAAAGTGGTGAGGTGCCACTTCTCTACTTTCAAGCAGTGCCAAGAGTGGCTCTCAAGGCTAAGCCGGGC
CACAGCGAGACCTGCCAAGCCCGAGGATCTCTTTGCCTTTGCCTACCATGCGTGGTGCCTGGGGCTGACC
GAGGAGGACCAGCATACCCACCTGTGCCAGCCAGGAGAGCACATCCGATGTCGACAGGAGGCAGAGCTCG
CAAGGATGGGTTTTGACCTGCAGAATGTCTGGAGAGTCTCGCATATCAACAGCAATTACAAGCTGTGCCC
TAGTTACCCCCAGAAGCTGCTGGTTCCTGTGTGGATCACAGATAAAGAGCTGGAGAACGTGGCTTCTTTC
CGCTCTTGGAAACGCATCCCTGTTGTGGTATACAGACACCTGCGCAACGGGGCTGCCATTGCTCGCTGCA
GCCAGCCTGAGATCAGCTGGTGGGGCTGGCGCAATGCTGATGATGAATACCTCGTCACGTCCATTGCCAA
AGCCTGCGCCTTAGACCCAGGGACAAGGGCCAGTGGGGGCTCCCTCAGCACTGGGACTAATGATGCCAGT
GAGGCATGTGACACAGATTTCGATTCTTCTCTGACTGCATGCTCTGGGGTGGAGAGCACAGCAGCCCCAC
AGAAACTGCTGATCCTGGATGCACGGTCCTACACAGCAGCCGTGGCTAACCGGGCCAAGGGTGGAGGCTG
TGAATGTGAAGAATACTATCCGAACTGTGAGGTCTTGTTTATGGGAATGGCCAACATCCACGCCATCCGG
AATAGCTTCCAGTACCTCCGGGCTGTGTGTAGCCAGATGCCAGATCCCAGCAACTGGTTGTCGGCACTGG
AGAGTACCAAATGGCTGCAGCACTTGTCAGTGATGCTAAAAGCAGCTGTGTTGGTAGCCAATACGGTAGA
TCGGGAAGGCCGGCCTGTGCTGGTACACTGCTCTGACGGCTGGGACCGTACACCACAGATTGTAGCCCTG
GCCAAAATACTACTGGATCCATATTACAGGACTCTGGAGGGCTTCCAAGTGTTAGTGGAGTCTGATTGGC
TGGATTTCGGACACAAGTTTGGAGACCGCTGTGGCCATCAGGAAAATGCAGAGGACCAAAATGAACAGTG
TCCTGTGTTCCTCCAGTGGCTTGATTCCGTGCATCAGCTGCTTAAGCAGTTCCCCTGCCTGTTTGAGTTC
AATGAAGCATTTCTGGTCCTGCATCCTGTGTGTCATGTCCGGGCCCTGCACCTCTGGACAGCTGTTTATC
TGCCTGCGTCATCTCCATGCACCCTTGGAGAGGAAAATATGGATCTTTACCTTTCCCCAGTGGCTCAGAG
CCAGGAATTTTCTGGTCGTTCTCTGGACAGGTTACCTAAAACCAGATCCATGGATGATCTGCTCTCTGCC
TGTGATACAAGCAGCCCCCTCACTCGTACTTCCAGCGACCCTAACCTGAATAACCACTCTCAGGAGGTCA
GAGGCAGCCTGGAGCCCTGGCACAGCAGTCCTGAAGGAGCAGAGACAGTCATAGACTCTGGAGTTGGAAG
CCCACAGCTGACTGTGGGAGAAATGGGCCTTCCTCCTCCTCTGCCCAGTAGCCAGAAAGAGTACTTGAGC
AATAAACCTTTCAAGGGTCATAAAAGTTGTTCTCTTAGTTATAAGTTGCTTAATACTTCTGTGTCCTGGG
AAATGAAGAGCAACACCTCTGACATCAAGGTCCTGGAAGAAACTGAAGCACTGGCCCCGGACCCTTCAGC
CCAAGAGGAGCAGGGTAGGACTTCTGATGGCTTAGGGAAGCCACCTGAACAGTTTCTAGAGAAGGAAGCT
GTCAGCTCACTCTGCAGTGTCTCTAGCAAGTGTGGTGGAGCCTGTGATTTTCCTGAGCCTCCCCAGGACC
CCCTAACAGGTACTCCCCAACAGCCCCACCTAGACTCCATGCAGATCTCGCCCTCAAGGTGCACTCCAGA
TCACAGTCAGGGCAGCCTTTGCAACCCACCAAGTGTGGCCAGCCAAACTCCAGAGCCAAATACTGACCTC
CTCAGCCAAGATCCCCCTGGTTCTACGGCAAGTATCTCCCACCAGGAACAGCCTAGCTCTGTGCCGGATC
TGATCTACAAGAAGGAGGATGCTGGCAAGAGAGGAAGTAAGAATGGGCAGCTGTTGGAAAATCCTCGCTT
TGGAAAAATGCCATTGGAGTTGGCCCGAAAGCCAATTTCTCAGAGCCAGATCAGTGAGTTCTCATTTTTA
GGGTCAAACTGGGACAGCTTCCAAGGGATGATGACTTCATTCCCAAGCGGAGAGACCACTCCTCGGCGCC
TGCTTGCTTATGGCTGTTGTAGCAAGAGGCCGAGCAATAAGCATATTCGAGCTGCAGGGCCCTGCCTTGG
GGGCCAGTGGGCTCAGAGAGAAGGGATGAAATCTCCTGTCTGTTCTAGTCATTCCAATGGACACTGCACA
GGCCCAGGAGGGAAGAACAACCGGATGTGGTTTTCCAGTCATCCGAAGCAAGTCTCCAGCACAAAGCCTT
CTCTTCTGAGCTGCCCTTCCCCAGTGCCTCCTCTCTACCTGGATGATGATGGACTCCCCTTTCCCACGGA
TGTGATCCAACACAGGTTACGGCAGATCGAAGCAGGGTACAGGCAAGAGGTGGAACAGCTACGGCGACAG
GTTCGAGAGCTTCAGATGAGGCTAGACATTCGTCATTGCTGTGCCCCTCCAGCAGAACCCCCCATGGACT
ATGAGGATGACTTTACGTGTTTAAAGGAGTCAGATGGCAGTGACACTGAAGACTTTGGCTCTGATCACAG
TGAAGACTGCCTTTCAGAAGCAAGCTGGGAACCCGTTGATAAGAAGGAGACTGAGGTGACTCGCTGGGTT
CCAGACCATATGGCATCCCACTGCTTTAACTGTGACTGTGAATTCTGGTTGGCCAAACGAAGACATCATT
GCAGAAATTGTGGGAACGTATTTTGTGCTGGATGCTGCCACCTTAAGCTGCCCATTCCTGATCAGCAACT
CTATGACCCAGTTCTCGTCTGTAACTCATGTTATGAACACATTCAAGTATCTCGTGCCAGGGAACTCATG
AGCCAACATCTGAAGAAACCCATTGCTACGGCTTCCAGTTGA

Translation (1133 aa):
MGEEGPPSLEYIQAKDLFPPKELVKEEENLQVPFTVLQGEGVEFLGRATDALIAISNYRLHIKFKDSVIN
VPLRMIDSVESRDMFQLHIACKDSKVVRCHFSTFKQCQEWLSRLSRATARPAKPEDLFAFAYHAWCLGLT
EEDQHTHLCQPGEHIRCRQEAELARMGFDLQNVWRVSHINSNYKLCPSYPQKLLVPVWITDKELENVASF
RSWKRIPVVVYRHLRNGAAIARCSQPEISWWGWRNADDEYLVTSIAKACALDPGTRASGGSLSTGTNDAS
EACDTDFDSSLTACSGVESTAAPQKLLILDARSYTAAVANRAKGGGCECEEYYPNCEVLFMGMANIHAIR
NSFQYLRAVCSQMPDPSNWLSALESTKWLQHLSVMLKAAVLVANTVDREGRPVLVHCSDGWDRTPQIVAL
AKILLDPYYRTLEGFQVLVESDWLDFGHKFGDRCGHQENAEDQNEQCPVFLQWLDSVHQLLKQFPCLFEF
NEAFLVLHPVCHVRALHLWTAVYLPASSPCTLGEENMDLYLSPVAQSQEFSGRSLDRLPKTRSMDDLLSA
CDTSSPLTRTSSDPNLNNHSQEVRGSLEPWHSSPEGAETVIDSGVGSPQLTVGEMGLPPPLPSSQKEYLS
NKPFKGHKSCSLSYKLLNTSVSWEMKSNTSDIKVLEETEALAPDPSAQEEQGRTSDGLGKPPEQFLEKEA
VSSLCSVSSKCGGACDFPEPPQDPLTGTPQQPHLDSMQISPSRCTPDHSQGSLCNPPSVASQTPEPNTDL
LSQDPPGSTASISHQEQPSSVPDLIYKKEDAGKRGSKNGQLLENPRFGKMPLELARKPISQSQISEFSFL
GSNWDSFQGMMTSFPSGETTPRRLLAYGCCSKRPSNKHIRAAGPCLGGQWAQREGMKSPVCSSHSNGHCT
GPGGKNNRMWFSSHPKQVSSTKPSLLSCPSPVPPLYLDDDGLPFPTDVIQHRLRQIEAGYRQEVEQLRRQ
VRELQMRLDIRHCCAPPAEPPMDYEDDFTCLKESDGSDTEDFGSDHSEDCLSEASWEPVDKKETEVTRWV
PDHMASHCFNCDCEFWLAKRRHHCRNCGNVFCAGCCHLKLPIPDQQLYDPVLVCNSCYEHIQVSRARELM
SQHLKKPIATASS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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